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1. Burgarella S, Cattaneo D, Pinciroli F, Masseroli M MicroGen, a Web based system for microarray experiment management Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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2. Ciccarelli FD, Von Mering C, Suyama M, Harrington ED, Izaurralde E, Bork P Formation and evolution of primate-specific gene functions Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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3. Chiappori F, Ferrario MG, Gaiji N, Fantucci P Docking of estrogen and genistein like molecular library on Estrogen Receptor alpha and beta Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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4. Catalano D, Licciulli F, Turi A, Grillo G, D'Elia D MitoRes: a bio-sequences resource of nuclearly encoded mitochondrial genes and products in metazoa Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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5. Castrignanò T, Talamo IG, Grillo G, Licciulli F, Gisel A, Liuni S, Mignone F, Pesole G CSTgrid: a high performance environment for searching "Conserved Sequence Tags" Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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6. Casadio R, Fariselli P, Martelli PL How many membrane proteins in the Human Genome? Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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7. Caprera A, Lazzari B, Vecchietti A, Stella A, Milanesi L, Pozzi C The ESTree db as an engine for peach EST related information retrieval Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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8. Campagna D, Romualdi C, Vitulo N, Favero M, Lexa M, Cannata N, Valle G RapH and RapD: two indexes designed for de novo identification of repeats in whole Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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9. Callegaro A, Spinelli R, Battaglia C, Caristina L, Cenzuales S, Beltrame L, Bicciato S Novel algorithm for automated genotyping of real time data Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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10. Luchini A, Callegaro A, Bicciato S Analysis of unreplicated time-course microarray experiments Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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11. Bilardi A, Campagna D, Campanaro S, Cestaro A, Levorin F, Vitulo N, Vezzi A, Valle G, Cannata N Quest for rho dependent terminators in prokaryotic genomes Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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12. Berardi M, Malerba D, Marinelli C, Leo P, Loglisci C, Scioscia G A text-mining application able to mine association rules from biomedical texts Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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13. Berardi M, Attimonelli M, Cascione I, Santamaria M, Accetturo M, Lascaro D, Berardi M, Ceci M, Loglisci C, Malerba D A data mining approach to retrieve mitochondrial variability data associated to clinical phenotypes Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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14. Baldacci L, Capozzi F, Golfarelli M, Lumini A, Rizzi S, Turano M Protein classification by surface analysis Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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15. Armano G, Mancosu G, Orro A, Saba M, Vargiu E MASSP: A hybrid genetic-neural system for predicting protein secondary structure Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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16. Arisi I, Roncaglia P, Cascante M, Cattaneo A The SYMBIONIC project: coordinating a neuronal cell simulation initiative with ongoing EU-wide Systems Biology programs Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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17. Andersen C, Magnoni L, Roncarati R, Diodato E, Raggiaschi R, Kremer A, Terstappen GC The Amyloid-beta toxicity core pathway Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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18. Ancona N, Maglietta R, D'Addabbo A, Liuni S, Pesole G Models for cancer classification by gene expression data Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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19. D'Agostino N, Aversano M, Chiusano ML ESTCLASS: a pipeline for EST data analysis using parallel computing Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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20. Lavorgna G, Triunfo R, Santoni F, Orfanelli U, Noci S, Bulfone A, Zanetti G, Casari G AntiHunter 2.0: increased speed and sensitivity in searching BLAST output for EST antisense transcripts Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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21. Kovaleva G, Bazykin G, Brudno M, Gelfand M Conservation rate of transcription factor binding sites in Saccharomyces genomes Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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22. Horner DS, Pirovano W, Pesole G Using phylogenetic information in the detection of correlated amino acid substitutions Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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23. Greco C, Sacco E, Vanoni M, De Gioia L Identification and in silico characterization of double histone fold domains in Cca3 and “Similar to Cca3” proteins Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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24. Gallimbeni R, Di Marino D, D'Annessa I, Morozzo della Rocca B, Desideri A, Falconi M Membranome: an active web site Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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25. Ferraro E, Via A, Ausiello G, Helmer-Citterich M A new neural network approach for the inference of SH3 domains specificity Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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26. Ferrario MG, Chiappori F, Ferrario MG, Gaiji N, Fantucci P Molecular dynamic study of the ligand binding domain of estrogen receptor alfa and beta Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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27. Faccioli P, Provero P, Herrmann C, Stanca AM, Terzi V A co-expression network for gene function characterization in barley Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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28. Fabbri M, Guffanti A, Cocito A, Furia L, Fallini R, McBlane F RSSDB: A database of cryptic recombination signal sequences involved in V(D)J recombination. Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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29. Emerson A, Rossi E, Giuliani S A database infrastructure for microarray data Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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30. Di Vincenzo L, Grgurina I, Pascarella S In silico analysis of the adenylation domains of the freestanding enzymes Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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31. Di Camillo B, Nair KS, Toffolo G, Cobelli C Identification of gene regulatory modules using entropy and mutual information Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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32. D'Elia D, Turi A, Catalano D, Licciulli F, Tripoli G, Porcelli D, Saccone C, Caggese C MitoDrome2: a database of OXPHOS nuclear genes in Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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33. D'Ursi P, Salvi E, Fossa P, Milanesi L, Rovida E Modelling the interaction of steroid receptors with organic polychlorinated compounds Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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34. Falconi M, Chillemi G, Di Marino D, D'Annessa I, Ceruso MA, Morozzo della Rocca B, Desideri A Molecular dynamics simulation of mitochondrial ADP/ATP carrier in absence and in presence of its natural inhibitor carboxyatractyloside Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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35. Ceol A, Montecchi-Palazzi L, Persico M, Gavrila C, Castagnoli L, Cesareni G The (new) MINT Database. Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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36. Cannata N, Forcato C, Fabbro G, Pasin A, Balen J, Valle G Searching for discriminating degenerated patterns between two populations of sequences Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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37. Vitulo N, Cestaro A, Vezzi A, Campanaro S, Simonato F, Lauro F, Malacrida G, Simionati B, Cannata N, Bartlett D, Valle G Development of tools based on UCSC and KEGG for the annotation of the Photobacterium profundum genome Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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38. Attimonelli M, Accetturo M, Scioscia G, Marinelli C, Leo P, Santamaria M, Mona S, Lascaro D, Cascione I, Tommaseo-Ponzetta M HMDB, the Human Mitochondrial Data Base, a genomic resource supporting population genetics studies and biomedical research on mitochondrial diseases Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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39. Attimonelli M, Accetturo M, Lascaro D Statistical prediction of pathogenic variant sites in human mitochondrial genomes Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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40. Di Vincenzo L, Grgurina I, Pascarella S Computational analysis of structural properties of classical and novel non ribosomal aminoacyladenylate forming domains. Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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41. Ceroni A, Frasconi P On the Role of Long-Range Dependencies in Learning Protein Secondary Structure Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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42. Accardo MC, Giordano E, Riccardo S, Digilio FA, Iazzetti G, Calogero RA, Furia M RNomics: a computational search for box C/D snoRNA genes in the D.melanogaster genome Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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43. Pozzoli U, Menozzi G, Riva L, Sironi M COBITIS: COmputational BIology Tools Interoperability Schema Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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44. Papaleo E, Vai M, Popolo L, Fantucci P, De Gioia L Structural models of the catalytic domain of the yeast β-(1,3)-glucan transferase Gas1 by combined threading and secondary structure prediction methods Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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45. Mapelli V, Accardo E, Fantinato S, Sacco E, De Gioia L, Vanoni M Structure-based hypothesis on active role of RasGEF αG-helix Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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46. Manzoni R, Sacco E, De Gioia L, Vanoni M Hydrophobic network between AB and HI hairpins suggests a new role for AB hairpin in GEF action mechanism Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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47. Gaiji N, Mazzitello R, Beringhelli T, Fantucci P Bovine β-lactoglobulin: Interaction studies with Norfloxacin Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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48. Rossi V, Picco R, Vacca M, D'Urso M, D'Esposito M, Galli T, Filippini F Novel sequence patterns specific to VAMP subfamilies Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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49. Antoniol G, Ceccarelli M A Computational Intelligence Approach to Unsupervised Microarray Image Gridding Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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50. Staiano A, Tagliaferri R, De Vinco L, Longo G Advanced Data Mining Methodology Based on Latent Variable Models Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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51. Fogolari F, Tosatto SCE Loop predictions using molecular mechanics/Poisson- Boltzmann solvent accessible surface area (MM/PBSA) Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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52. Roasio R, Fu L-M, Botta M, Medico E MulCom: a novel program for the statistical analysis of genomic data obtained on multiple microarray platforms Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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53. Santarossa G, Roggia L, De Gioia L, Fantucci P A Molecular Dynamics Study of the DoubleDominant Negative Mutation W809E/T935E in Ras-GEF Complex Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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54. Pasa S, Kohn KW, Aladjem MI, Consiglieri C, Cocozza S, Bordo D, Parodi S In silico model of Molecular Interaction Maps: c-Myc and cell cycle control Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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55. D'Ursi P, Rovida E, Merati G, Biguzzi E, Caprera A, Milanesi L, Faioni E Computational analysis of naturally occurring protein C mutants: electrostatic properties implications. Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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56. Trovato A, Seno F A new perspective on Analysis of Helix-Helix Packing Preferences in Globular Proteins Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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57. Toppo S, Fontana P, Velasco R, Valle G, Tosatto SCE FOX (FOld eXtractor): A novel protein fold recognition method using iterative PSI-BLAST searches and structural alignments Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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58. Marra D, Malusa F, Piersigilli F, Manniello MA, Romano P The CABRI website: integrating biological resources information in the bioinformatics network environment Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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59. Cozzini P, Fornabaio M, Mozzarelli A, Spyrakis F, Kellogg GE, Abraham DJ HIV-1 protease: a good system to evaluate protein-ligand interactions, water role and protonation state, using an empirical approach Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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60. Eleuteri A, Tagliaferri R, Acernese F, Milano L, De Laurentiis M Information Geometry for Survival Analysis and Feature Selection Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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61. Sboner A, Barbareschi M, Dell'Anna R, Demichelis F Large scale TMA experiments: automation and data management Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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62. Marabotti A, D'Auria S, Rossi M, Facchiano AM Modelling the Three-Dimensional Structure of a Sugar Binding Protein from a Thermophilic Organism: Analysis on Stability and Sugar Binding Simulations. Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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63. Barberis M, De Gioia L, Ruzzene M, Sarno S, Coccetti P, Pinna LA, Vanoni M, Alberghina L The Cyclin-Dependent Kinase Inhibitor Sic1 of Saccharomyces cerevisiae Is a Functional and Structural Homologous to the Mammalian p27Kip1 Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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64. Di Camillo B, Toffolo G, Cobelli C, Nair KS Selection of Insulin Regulated Gene Expression Profiles Based on Intensity-Dependent Noise Distribution of Microarray Data Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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65. Muselli M, Ruffino F, Valentini G An Artificial Model for Validating Gene Selection Methods Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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66. Malerba G, Trabetti E, Sandri M, Xumerle L, Cavallari U, Galavotti R, Biscuola M, Patuzzo C, Pignatti PF Single and multilocus analyses for the identification of at risk genotypes in cardiovascular disease Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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67. Galfrè S, Morandin F, Cozza A, Pellegrini S, Marangoni R A method to improve microarray-based identification of SNPs Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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68. Riva L, Menozzi G, Sironi M, Cerutti S, Pozzoli U A Wavelet Based Method to Predict Nucleosome Positions Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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69. Menozzi G, Riva L, Sironi M, Pozzoli U Intron and exon lengths influence on splicing Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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70. D'Alessandro L, Felice B, Montemurro F, Medico E Meta-analysis of multiple microarray datasets reveals a novel genomic signature associated to invasive growth of epithelial cells and early breast cancer metastasis. Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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71. Capriotti E, Fariselli P, Rossi I, Casadio R Improving the Detection of Protein Remote Homologues Using Shannon Entropy Information Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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72. Di Dato V, Di Lauro R, Chiusano ML Comparative genomics to identify regulatory regions: an example from the PAX8 gene Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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73. Ceroni A, Frasconi P Using Constraints on Beta Partners to Reconstruct Mainly Beta Proteins Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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74. Puntervoll P, Linding R, Gemund C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DMA, Ausiello G, Brannetti B, Costantini A, Zanzoni A, Maselli V, Via A, Cesareni G, Diella F, Superti-Furga G, Wyrwicz L, Ramu C, McGuigan C, Gudavalli R, Letunic I, Bork P, Rychlewski L, Kuster B, Helmer-Citterich M, Hunter WN, Aasland R, Gibson TJ Eukaryotic Linear Motifs in the ELM Web Tool Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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75. Amici R, Bartocci E, Merelli E A virtual laboratory for simulating metabolic pathways Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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76. Di Bernardo D, Gardner TS, Collins JJ Drug Target Identification from Inferred Gene Networks: a computational and experimental approach Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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77. Cordero F, Lazzarato F, De Bortoli M, Weisz A, Cicatiello L, Scafoglio C, Basile W, Calogero RA Putative Estrongen-Responsive Genes database (PERG) Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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78. Bansal M, Di Bernardo D Inferring gene regulatory networks from time expression profiles Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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79. Ferraro E, Ausiello G, Panni S, Cesareni G, Helmer-Citterich M Definition of a neural strategy for the prediction of protein interaction specificity Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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80. Cappadona S, Diestellhorst L, Kemp G, Cerutti S Analysis of β-helix proteins using the STACK toolkit Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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81. Carrara GE, Stella A, Pinciroli F, Alcalay M, Masseroli M Automatic extraction of gene annotations from data-rich HTML pages Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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82. Marangoni R Simulating genes families Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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83. Bonizzoni P, Dondi R, Rizzi R, Pesole G ASPIC: a Novel Method to Predict Alternative Splicing Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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84. Lazzari B, Milanesi L, Stella A, Caprera A, Bianchi F, Vecchietti A, Pozzi C ESTree DB: a Tool for Peach Functional Genomics Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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85. Catalano D, Licciulli F, Grillo G, Liuni S, Pesole G, Saccone C, D'Elia D MitoNuc: a database of nuclear genes encoding for mitochondrial proteins Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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86. Mutarelli M, Basile W, Cicatiello L, Scafoglio C, Colonna G, Weisz A, Facchiano AM Comparative analysis with three different microarray platforms of the oestrogenresponsive transcriptome from breast cancer cells Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |