Welcome

Description

Documentation
  SWS
  CABRI
  TP53

Availability

Download

Contacts

Links

Portal

IST Bioinformatics Web Services: CABRI: Yeasts strains

Services
Currently, the following Web Services are available:
getYeastIdsByName - getYeastIdsByProperty - getYeastsById

---

getYeastIdsByName: Get yeasts strains ID searching by name
Inputs:

<libs>

acronym(s) of searched CABRI catalogues (MANDATORY).

No wild character (*,?,%) is allowed.

<name>

scientific name of searched yeasts strains (MANDATORY).

The wild character '*' is allowed.

Output:

a list of unique IDs preceeded by the acronym of the related catalogue (<catalogue_acronym>:<unique_id>)

Example:

Inputs: <libs>: "CBS_YEAST_SP_BCCM_MUCL_SP_BCCM_IHEM" ; <name>: "Arthroascus_SP_javanensis"
Output:

   BCCM_IHEM:IHEM 5821
   BCCM_MUCL:MUCL 31237
   CBS_YEAST:CBS 2555

Test this Web Services
Libs:
Name:

---

getYeastIdsByProperty: Get yeasts strains ID searching by properties (all text)
Inputs:

<libs>

acronym(s) of searched CABRI catalogues (MANDATORY).

No wild character (*,?,%) is allowed.

<text>

query terms to be searched for (MANDATORY).

The wild character '*' is allowed.

Output:

a list of unique IDs preceeded by the acronym of the related catalogue (<catalogue_acronym>:<unique_id>)

Example:

Input: <libs>: CBS_YEAST_SP_BCCM_MUCL_SP_BCCM_IHEM ; <text>: "CCRC_SP_21392"
Output:

   BCCM_MUCL:MUCL 31237
   CBS_YEAST:CBS 2555

Test this Web Services
Libs:
Text:

---

getYeastsById: Get yeasts strains details searching by ID
Inputs:

<libs>

acronym(s) of searched CABRI catalogues (MANDATORY).

When more than one acronym are specified, they must be separated by a space.

No wild character (*,?,%) is allowed.

<ID>

unique ID(s) for a record in the specified catalogue (MANDATORY).

Wild character '*' is allowed.

<Format>

the format of the output (MANDATORY).

one among 'text', 'html', 'json'.

Output:

the full record(s) of the strain(s) specified by the provided ID(s) in the searched catalogue

Example:

Inputs:

<libs>: BCCM_LMG

<ID>: LMG 991

Output (according to the various formats):

text

Strain_number CBS 113 Other_collection_numbers ATCC 16763; IFO 0806; JCM 3589; NRRL Y-993 Name Pichia anomala, (E.C. Hansen) Kurtzman Organism_type Yeasts Restrictions No Status Type strain of Willia schneggii History U. Weber > CBS Literature Antonie van Leeuwenhoek 1984; 50: 209-217 [PMID: 6486768] Conditions_for_growth GPYA; 25 C Form_of_supply Dried

html

Strain_number CBS 113 Other_collection_numbers ATCC 16763; IFO 0806; JCM 3589; NRRL Y-993 Name Pichia anomala, (E.C. Hansen) Kurtzman Organism_type Yeasts Restrictions No Status Type strain of Willia schneggii History U. Weber > CBS Literature Antonie van Leeuwenhoek 1984; 50: 209-217 [PMID: 6486768] Conditions_for_growth GPYA; 25 C Form_of_supply Dried

json

{ "Strain_number": "CBS 113", "Other_collection_numbers": "ATCC 16763; IFO 0806; JCM 3589; NRRL Y-993", "Name": "Pichia anomala, (E.C. Hansen) Kurtzman", "Organism_type": "Yeasts", "Restrictions": "No", "Status": "Type strain of Willia schneggii", "History": "U. Weber > CBS", "Literature": "Antonie van Leeuwenhoek 1984; 50: 209-217 [PMID: 6486768]", "Conditions_for_growth": "GPYA; 25 C", "Form_of_supply": "Dried" }

Test this Web Services
	Libs:		ID:		Format:	texthtmljson

Documentation

CABRI

Bacteria
Filamentous fungi
Yeasts
Plasmids
Phages
Cell lines
IBRD
General access