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IST Bioinformatics Web Services: CABRI: Plasmids

Services
Currently, the following Web Services are available:
getPlasmidIdsByName - getPlasmidIdsByProperty - getPlasmidsById

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getPlasmidIdsByName: Get plasmids ID searching by name (wsdl)

Inputs:

<libs>

acronym(s) of searched CABRI catalogues (MANDATORY).

No wild character (*,?,%) is allowed.

<name>

name of searched plasmids (MANDATORY).

The wild character '*' is allowed.

Output:

a list of unique IDs preceeded by the acronym of the related catalogue (<catalogue_acronym>:<unique_id>)

Example:

Inputs: <libs>: BCCM_LMBP ; <name>: "LNX*"
Output:

   BCCM_LMBP:LMBP 4227
   BCCM_LMBP:LMBP 4228
   BCCM_LMBP:LMBP 4229

Test this Web Services
Libs:
Name:

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getPlasmidIdsByProperty: Get plasmids ID searching by properties (all text) (wsdl)

Inputs:

<libs>

acronym(s) of searched CABRI catalogues (MANDATORY).

No wild character (*,?,%) is allowed.

<text>

query terms to be searched for (MANDATORY).

The wild character '*' is allowed.

Output:

a list of unique IDs preceeded by the acronym of the related catalogue (<catalogue_acronym>:<unique_id>)

Example:

Input: <libs>: DSMZ_PLASMID ; <text>: ColE1
Output:

   DSMZ_PLASMID:DSM 5163
   DSMZ_PLASMID:DSM 3878
   DSMZ_PLASMID:DSM 3877
   DSMZ_PLASMID:DSM 3872

Test this Web Services
Libs:
Text:

---

getPlasmidsById: Get plasmids details searching by ID (wsdl)

Inputs:

<libs>

acronym(s) of searched CABRI catalogues (MANDATORY).

No wild character (*,?,%) is allowed.

<ID>

unique ID for a record in the specified catalogue (MANDATORY).

Space MUST be substituted by the '_SP_' string. E.g.: "BCCM_SP_991" instead of "BCCM 991".

No wild character (*,?,%) is allowed.

Output:

the full record of the specified ID in the searched catalogue

Example:

Inputs: <libs>: NCCB_PLASMID ; <ID>: "NCCB_SP_3132"
Output:

   Collection_number NCCB 3132
   Name pJAB1
   Other_culture_collection_numbers PC-V3132
   Type plasmid
   Class Recombinant
   Constructed_from pTR262; pJM101
   Literature Piggot, P.J. et al., J.Gen.Microbiol. (1984) 130:2123-2136 [PMID: 6088672]
   History_of_deposit -
   Restricted_distribution No
   Host_for_distribution Escherichia coli K12 SL2036
   Medium Medium 171
   Selectable_phenotype Chloramphenicol resistance
   Replicon pMB1
   Transfer_ability Non-transferable
   Host_range Escherichia coli vector
   Properties_and_applications positive/negative screening vector;general cloning vector
   Molecular_weight 5.7 kb
   Cloned_gene lambda cI857; Tc behind promoter
   Further_information plasmid cannot replicate in E. coli, if it contains a fragment homologous
     to chromosomal DNA of B. subtilis, competent cells will be transformed at high frequency
   Restriction_sites (U,I(lambda cI857)):BclI,HindIII; (U):AvaI,EcoRV,PstI
   Price_code 1

Test this Web Services
Libs:
ID:

Documentation

CABRI

Bacteria
Filamentous fungi
Yeasts
Plasmids
Phages
Cell lines
IBRD
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