Welcome

Description

Documentation
  SWS
  CABRI
  TP53

Availability

Download

Contacts

Links

Portal

IST Bioinformatics Web Services: CABRI: Phages

Services
Currently, the following Web Services are available:
getPhageIdsByName - getPhageIdsByProperty - getPhagesById

---

getPhageIdsByName: Get phage strains ID searching by name (wsdl)

Inputs:

<libs>

acronym(s) of searched CABRI catalogues (MANDATORY).

No wild character (*,?,%) is allowed.

<name>

name of searched phage strains (MANDATORY).

The wild character '*' is allowed.

Output:

a list of unique IDs preceeded by the acronym of the related catalogue (<catalogue_acronym>:<unique_id>)

Example:

Inputs: <libs>: NCIMB_PHAGES ; <name>: 209P
Output:

     NCIMB_PHAGES:NCIMB 9563

Test this Web Services
Libs:
Name:

---

getPhageIdsByProperty: Get phage strains ID searching by properties (all text) (wsdl)

Inputs:

<libs>

acronym(s) of searched CABRI catalogues (MANDATORY).

No wild character (*,?,%) is allowed.

<text>

query terms to be searched for (MANDATORY).

The wild character '*' is allowed.

Output:

a list of unique IDs preceeded by the acronym of the related catalogue (<catalogue_acronym>:<unique_id>)

Example:

Input: <libs>: DSMZ_PHAGES_SP_NCIMB_PHAGES ; <text>: actinomycetes
Output:

   DSMZ_PHAGES:DSM 49109
   DSMZ_PHAGES:DSM 49112
   DSMZ_PHAGES:DSM 49111
   DSMZ_PHAGES:DSM 49110
   DSMZ_PHAGES:DSM 49106
   ........

Test this Web Services
Libs:
Text:

---

getPhagesById: Get phage strains details searching by ID (wsdl)

Inputs:

<libs>

acronym(s) of searched CABRI catalogues (MANDATORY).

No wild character (*,?,%) is allowed.

<ID>

unique ID for a record in the specified catalogue (MANDATORY).

Space MUST be substituted by the '_SP_' string. E.g.: "BCCM_SP_991" instead of "BCCM 991".

No wild character (*,?,%) is allowed.

Output:

the full record of the specified ID in the searched catalogue

Example:

Inputs: <libs>: NCCB_PHAGES ; <ID>: NCCB_SP_3479
Output:

   Collection_number NCCB 3479
   Name f2
   Type phage
   Other_collection_numbers PC-V3479
   Restricted_distribution No
   Literature Zinder, N.D. (ed.), 1975, RNA Phages, Cold Spring Harbor Laboratory,
     Cold Spring Harbor, NY.
   History_of_deposit -
   Host_for_propagation Escherichia coli (F+, F' or Hfr)
   Host_used_for_propagation Escherichia coli NCCB 2122
   Lysogenicity No
   Virus_used_for phage typing
   Cell_surface_receptor F pili
   Medium Medium 171
   Class Recombinant
   Viral_morphology icosahedral
   Plaque_forming_phage No
   Clear_plaque_morphology No
   Particle_size 4(?) kb
   Nucleic_acid_type RNA,single stranded,linear
   Properties_and_applications
   Start_codon No
   Further_information male-specific phage, linear plus-strand RNA
   Price_code 1

Test this Web Services
Libs:
ID:

Documentation

CABRI

Bacteria
Filamentous fungi
Yeasts
Plasmids
Phages
Cell lines
IBRD
General access