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IST Bioinformatics Web Services: CABRI: General access

Services
The following Web Services allows for general searches in all CABRI catalogues:
getCabriEntriesByField - getCabriFieldsByField - getCabriIdsByField

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getCabriEntriesByField: Get entries from any specified CABRI catalogue by querying a specified field (wsdl)

Inputs:

<catalogue>

name of searched catalogue (MANDATORY).

No wild characteris is allowed.

<search_field>

name of the field to be used for the search (MANDATORY).

No wild characteris is allowed.

<query>

the term to be searched in th especified field (MANDATORY).

The wild character '*' is allowed.

Output:

full entries from the specified catalogue

Example:

Inputs: <catalogue>: ICLC ; <search_field> Cell_line_name ; <query> "hela*"
Output:

   Accession_number ICLC HTL95023
   Cell_line_name HeLa
   Brief_description Species: human, Black; Tissue: cervix; Tumor: carcinoma, epitheloid
   Description Species: human, Black female 31 years old; Tissue: cervix; Tumor: carcinoma, epitheloid
   Depositor Obtained from ECACC
   Bibliographic_reference Cancer Res 1952;12:264
   Morphology epithelial-like, grown as monolayer
   Culture_conditions continuous culture; MEM (EBSS) + 10% FBS + 2mM L-Glutamine + 1% non-essential
     amino acids; Split confluent cultures 1:5-1:10 using trypsin/EDTA; seed at 1-3x104 cells/cm2;
     37C, 5% CO2
   Viruses Search for viruses was not performed
   Properties antitumour testing; transformation; tumorigenicity; cytotoxicity; bacterial invasiveness;
     virology; Susceptible to: adenovirus 3, measles, poliovirus 1, echovirus, vaccinia, arbovirus,
     respiratory syncytial virus, reovirus 3, rhinovirus, Coxsackie
   Release_conditions Cell line available for distribution. For non-commercial investigative use only
   Hazard -
   Species_validation Validated by isoenzymes: confirmed as human with AST, G6PD, MD
   Tumorigenicity tumorigenic in nude mice
   Karyology aneuploid
   Freezing_medium Culture medium + 50% FBS + 10% DMSO
   Sterility mycoplasma negative, HOECHST and PCR
   Further_bibliography J Exp Med 1953;97:695; Obstet Gynecol 1971;38:945-949 [PMID: 4942173]

   Accession_number ICLC HTL95015
   Cell_line_name HeLa 382
   Brief_description Species: human, Black; Tissue: cervix; Tumor: carcinoma, epitheloid; pBact.;
     Original line: HeLa
   Description Species: human, Black female 31 years old; Tissue: cervix; Tumor: carcinoma, epitheloid;
     Transfected with pBact, expression vector under control of the human beta actin promotor,
     resistant to G418S. Control  to  HeLa  422  and  HeLa  432.; Original line: HeLa
   Depositor Dr.U. Pfeffer, Molecular biology Unit, IST at ABC, Genoa Italy.
   Bibliographic_reference -
   Morphology epithelial-like, grown as monolayer
   ........

Test this Web Services
Catalogue:
Search field:
Query:

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getCabriFieldByField: Get a specified field contents from any specified CABRI catalogue by querying a specified field (wsdl)

Inputs:

<catalogue>

name of searched catalogue (MANDATORY).

No wild characteris is allowed.

<search_field>

name of the field to be used for the search (MANDATORY).

No wild characteris is allowed.

<query>

the term to be searched in th especified field (MANDATORY).

The wild character '*' is allowed.

<return_field>

name of the field to be returned after the search (MANDATORY).

No wild characteris is allowed.

Output:

specified field contents for matching records from the specified catalogue

Example:

Inputs:

<catalogue>: ICLC ; <search_field> Cell_line_name ; <query> "hela*" ; <return_field>: Culture_conditions

Output:

   Culture_conditions continuous culture; MEM (EBSS) + 10% FBS + 2mM L-Glutamine + 1% non-essential
     amino acids; Split confluent cultures 1:5-1:10 using trypsin/EDTA; seed at 1-3x104
     cells/cm2; 37C, 5% CO2
   Culture_conditions continuous culture; DMEM + 10% FBS + 2mM L-Glutamine; Split confluent cultures
     1:2-1:6 using trypsin/EDTA; seed at 1-3x104 cells/cm2; 37C, 5% CO2.
   Culture_conditions continuous culture; DMEM + 10% FBS + 2mM L-Glutamine; Split confluent cultures
     1:2-1:6 using trypsin/EDTA; seed at 1-3x104 cells/cm2, 37C, 5% CO2.
   Culture_conditions continuous culture; DMEM + 10% FBS + 2mM L-Glutamine; Split confluent cultures
     1:2-1:6 using trypsin/EDTA; seed at 1-3x104 cells/cm2; 37C, 5% CO2.
   Culture_conditions continuous culture; Ham's F12 + 10% FBS + 2mM L-Glutamine; Semiadherent cell line,
     adaptable to growth in suspension (spinner) culture. Maintain culture between 3 and 9x105 cells/ml;
     split 1:2-1:4. 37C, 5% CO2

Test this Web Services
Catalogue:
Search field:
Return field:
Query:

---

getCabriIdsByField: Get IDs from any specified CABRI catalogue by querying a specified field (wsdl)

Inputs:

<catalogue>

name of searched catalogue (MANDATORY).

No wild characteris is allowed.

<search_field>

name of the field to be used for the search (MANDATORY).

No wild characteris is allowed.

<query>

the term to be searched in th especified field (MANDATORY).

The wild character '*' is allowed.

Output:

matching records IDs from the specified catalogue

Example:

Inputs: <catalogue>: ICLC ; <search_field> Cell_line_name ; <query> "hela*"
Output:

   ICLC:ICLC HTL95023
   ICLC:ICLC HTL95015
   ICLC:ICLC HTL95014
   ICLC:ICLC HTL95016
   ICLC:ICLC HTL95020

Test this Web Services
Catalogue:
Search field:
Query:

Documentation

CABRI

Bacteria
Filamentous fungi
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