GetImplementations

IBWS: IST Bioinformatics Web Services
Welcome	Description	Documentation	Availability	Download	Contacts	Links	Portal

Nota bene: this service is currently not available

Portal

IST Bioinformatics Web Services: SWS: getImplementations

getImplementations: Retrieve data from srsdb about a specified implementations (wsdl)

Inputs:

<site_acronym>

acronym of the SRS site, as used in the BioWisdom list of public SRS sites (optional). When missing, all sites are considered. No wild character (*,?,%) is allowed.

<lib_acronym>

acronym of the database, as used in the BioWisdom list of public SRS sites (optional). When missing, all databases are considered. No wild character (*,?,%) is allowed.

Combinations of inputs
When only the site is provided, a list of all the databases hosted by that site is returned.
When only the database is provided, a list of all sites including the databases is returned.
When none input is provided, all implementations (database at site) are returned.

Examples:

Inputs: <site_acronym>: IST ; <lib_acronym>: <null>
Output:

     IST - TP53_CELL_LINES (1754 entries, URL: http://srs.o2i.it/srs71bin/cgi-bin/wgetz)
     IST - TP53_GERMLINE (1783 entries, URL: http://srs.o2i.it/srs71bin/cgi-bin/wgetz)
     IST - TP53_GERMLINE_REF (148 entries, URL: http://srs.o2i.it/srs71bin/cgi-bin/wgetz)
     IST - TP53_MUTATIONS (5688 entries, URL: http://srs.o2i.it/srs71bin/cgi-bin/wgetz)
     IST - TP53_MUTATION_FUNCTION1 (2505 entries, URL: http://srs.o2i.it/srs71bin/cgi-bin/wgetz)
     IST - TP53_MUTATION_FUNCTION2 (2312 entries, URL: http://srs.o2i.it/srs71bin/cgi-bin/wgetz)
     IST - TP53_POLYMORPHISM (42 entries, URL: http://srs.o2i.it/srs71bin/cgi-bin/wgetz)
     IST - TP53_PREVALENCE (1570 entries, URL: http://srs.o2i.it/srs71bin/cgi-bin/wgetz)
     IST - TP53_PROGNOSIS (142 entries, URL: http://srs.o2i.it/srs71bin/cgi-bin/wgetz)
     IST - TP53_SOMATIC (23544 entries, URL: http://srs.o2i.it/srs71bin/cgi-bin/wgetz)
     IST - TP53_SOMATIC_REF (2003 entries, URL: http://srs.o2i.it/srs71bin/cgi-bin/wgetz)

Inputs: <site_acronym>: <null> ; <lib_acronym>: PROSITE
Output:

     AFFRC - PROSITE (1841 entries, URL: http://srs.dna.affrc.go.jp/srs8//srs)
     CSC-Finland - PROSITE (2073 entries, URL: http://srs.csc.fi/srs//srs)
     SAS - PROSITE (2068 entries, URL: http://www.embnet.sk:8080/srs81//srs)
     INRA - PROSITE (2073 entries, URL: http://bioinfo.genopole-toulouse.prd.fr/srs//srs)
     NGIC - PROSITE (2029 entries, URL: http://srs.ngic.re.kr/srs//srs)
     NBN - PROSITE (1926 entries, URL: http://srs.nbn.ac.za//srs)
     Biocenter - PROSITE (1933 entries, URL: http://emb2.bcc.univie.ac.at:8080/srs//srs)
     CEINGE - PROSITE (1926 entries, URL: http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz)
     EBI - PROSITE (2073 entries, URL: http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz)
     Pasteur - PROSITE (2067 entries, URL: http://srs.pasteur.fr/cgi-bin/wgetz)
     CNR - PROSITE (2006 entries, URL: http://www.ba.itb.cnr.it//srs7bin/cgi-bin/wgetz)
     NBIC - PROSITE (2073 entries, URL: http://srs.bioinformatics.nl/srsbin/cgi-bin/wgetz)
     WBW - PROSITE (2073 entries, URL: http://www.bioinformatics.nl/srsbin/cgi-bin/wgetz)
     IUBIO - PROSITE (1775 entries, URL: http://iubio.bio.indiana.edu/srsbin/cgi-bin/wgetz)
     ICPRO - PROSITE (1841 entries, URL: http://csc-fserve.hh.med.ic.ac.uk/srs71bin/cgi-bin/wgetz)
     DKFZ - PROSITE (2073 entries, URL: http://genius.embnet.dkfz-heidelberg.de/menu/cgi-bin/srs7.1.3.1/wgetz)
     CU - PROSITE (2068 entries, URL: http://walnut.bioc.columbia.edu/srs71bin/cgi-bin/wgetz)
     BioSino - PROSITE (2037 entries, URL: http://bioinfo.biosino.org/srs71bin/cgi-bin/wgetz)
     DDBJ - PROSITE (1841 entries, URL: http://srs.ddbj.nig.ac.jp/cgi-bin/wgetz)

Documentation

SWS

getDBs
getSites
getImplementations
querySWS
testSites

Welcome	Description	Documentation	Availability	Download	Contacts	Links	Portal
Webmaster: Paolo Romano; Last update: January 28, 2020.