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IBWS documentation: TP53: Somatic Mutations dataset

Services
The following Web Services allow to access the TP53 Somatic Mutations dataset:
getP53MutationsByIds - getP53MutationIdsByCodonNumber - getP53MutationIdsByEffect - getP53MutationIdsByExon - getP53MutationIdsByIntron - getP53MutationIdsByProperty -

getP53MutationsByIds: Get TP53 somatic mutations by unique ID (wsdl)

Inputs:
<id>
the unique ID to be searched in the somatic mutations dataset
No wild characters are allowed


Output:
The full record of matched entry


Example:
Inputs:
<id>: 234

Output:
   Mutation_id 234
   MUT_ID 2095
   Exon 5
   Nucleotide 12505
   Codon_number 173
   Splice_site no
   CpG_site no
   Type G:C>C:G
   Description G>C
   c_description c.517G>C
   Mut_rate 0.04
   WT_codon GTG
   Mutant_codon CTG
   WT_AA Val
   Mutant_AA Leu
   Protein_description p.V173L
   Mut_rateAA 0.1
   Effect missense
   Structural_motif L2/L3
   Putative_stop 0
   Sample_name MAZ91-87
   Sample_id 223
   Sample_source surgery
   Tumor_origin primary
   Topography OVARY
   Short_topo OVARY
   Topo_code C56
   Sub_topography Ovary
   Morphology Carcinoma, NOS
   Morpho_code 8010/3
   P53_IHC NA
   Individual_id 223
   Sex F
   Population Western Europe
   Country Western Europe, NOS
   Germline_mutation NA
   Tobacco NA
   Alcohol NA
   Exposure NA
   Infectious_agent NA
   Ref_id 20
   PubMed_entry 0001923532
Test this Web Services
ID:

getP53MutationIdsByCodonNumber: Get TP53 somatic mutations unique IDs by codon number (wsdl)

Inputs:
<libs>
the dataset to be queried ("tp53_somatic")
No wild characters are allowed

<codon>
the codon number to be searched in the dataset.
Valid values are in the range 5-394. A 0 means that the codon number is unknown.
No wild characters are allowed


Output:
The unique IDs of matched entries


Example:
Inputs:
<libs>: tp53_somatic
<codon>: 11

Output:
   TP53_SOMATIC:25075
   TP53_SOMATIC:11950
   TP53_SOMATIC:22509
   TP53_SOMATIC:22277
   TP53_SOMATIC:22279
   TP53_SOMATIC:12673
   TP53_SOMATIC:24087
   TP53_SOMATIC:1418
   TP53_SOMATIC:6502
   TP53_SOMATIC:3491
   TP53_SOMATIC:22536
Test this Web Services
Libs:
Codon:

getP53MutationIdsByEffect: Get TP53 somatic mutations unique IDs searching by effect of the mutation on the protein sequence (wsdl)

Inputs:
<libs>
the dataset to be queried ("tp53_somatic")
No wild characters are allowed

<effect>
the effect to be searched in the specified dataset
No wild characters are allowed


Output:
The unique IDs of matched entries


Example:
Inputs:
<libs>: tp53_somatic
<effect>: nonsense

Output:
   .........
   TP53_SOMATIC:15421
   TP53_SOMATIC:9455
   TP53_SOMATIC:11976
   TP53_SOMATIC:12327
   TP53_SOMATIC:12325
   TP53_SOMATIC:16852
   TP53_SOMATIC:18090
   .........
Test this Web Services
Libs:
Effect:

getP53MutationIdsByExon: Get TP53 somatic mutations' IDs by exon number (wsdl)

Inputs:
<libs>
the dataset to be queried ("tp53_somatic")
No wild characters are allowed

<exon>
the exon number to be searched in the specified dataset
Valid vaues are in the range 2-11
No wild characters are allowed


Output:
The unique IDs of matched entries


Example:
Inputs:
<libs>: tp53_somatic
<exon>: 3

Output:
   TP53_SOMATIC:9339
   TP53_SOMATIC:19041
   TP53_SOMATIC:19335
   TP53_SOMATIC:19561
   TP53_SOMATIC:25176
   TP53_SOMATIC:20828
   TP53_SOMATIC:7156
   TP53_SOMATIC:25286
   TP53_SOMATIC:20157
   TP53_SOMATIC:6226
   TP53_SOMATIC:22281
   TP53_SOMATIC:22282
   TP53_SOMATIC:1115
   TP53_SOMATIC:27157
   TP53_SOMATIC:20065
   TP53_SOMATIC:4254
   TP53_SOMATIC:25970
Test this Web Services
Libs:
Exon:

getP53MutationIdsByIntron: Get TP53 somatic mutations unique IDs searching the dataset by Intron number (wsdl)

Inputs:
<libs>
the dataset to be queried ("tp53_somatic")
No wild characters are allowed

<intron>
the intron number to be searched in the specified dataset.
Valid vaues are in the range 2-11
No wild characters are allowed


Output:
The unique IDs of matched entries


Example:
Inputs:
<libs>: tp53_somatic
<intron>: 9

Output:
   TP53_SOMATIC:12201
   TP53_SOMATIC:10490
   TP53_SOMATIC:20100
   TP53_SOMATIC:13872
   TP53_SOMATIC:24741
   TP53_SOMATIC:23527
   TP53_SOMATIC:709
   TP53_SOMATIC:5306
   TP53_SOMATIC:9071
   ........
Test this Web Services
Libs:
Intron:

getP53MutationIdsByProperty: Get TP53 somatic mutations uniqe IDs searching the dataset by property (all text) (wsdl)

Inputs:
<libs>
the dataset to be queried ("tp53_somatic")
No wild characters are allowed

<text>
the unique ID to be searched in the specified dataset
The '*' wild character is allowed as a postfix


Output:
The unique IDs of matched entries


Example:
Inputs:
<libs>: tp53_somatic
<text>: 'adenocarcinoma*'

Output:
   TP53_SOMATIC:10194
   TP53_SOMATIC:12514
   TP53_SOMATIC:12513
   TP53_SOMATIC:12512
Test this Web Services
Libs:
Text:



Documentation

TP53

Somatic
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Webmaster: Paolo Romano; Last update: January 28, 2020.