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Implicit Methods |
on deletion: |
cleanup |
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delete |
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getData |
Get data for this entry.
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dtName |
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Name of the class of the object of requested data type.
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![Returns a value Returns a value](/srs71m/images/returns.gif) ![](/srs71m/images/object_button.gif) |
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getJob |
Returns the job object opened for entry.
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![Returns a value Returns a value](/srs71m/images/returns.gif)
Job
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getSeq |
Get the sequence for this object. If it is not a sequence
databases an undefined (?) is returned.
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format |
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Format to print the sequence in. Options include
"embl", "swiss", "fasta", "plain", "genbank", "pretty",
"pir", "gcg".
If no format specified, fasta is used.
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dbName |
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Use this dbName in the entry name. Default is to use the
entry's library name.
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inputFormat |
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Format of the sequence in the flatfile. Options include
"embl", "swiss", "genbank"
If no input format is specified, embl/swissprot (i.e.
the line before the sequence starts begins with SQ and
the line after the sequence ends uses "\\"
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![Returns a value Returns a value](/srs71m/images/returns.gif) ![](/srs71m/images/str_button.gif) |
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inSet |
Returns true if the entry is in the set, otherwise 0.
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set |
Set
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The set to check in.
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![Returns a value Returns a value](/srs71m/images/returns.gif) ![](/srs71m/images/int_button.gif) |
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lib |
Returns the actual library object of the library
the entry is from.
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![Returns a value Returns a value](/srs71m/images/returns.gif)
Library
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libName |
Returns the library name the entry is from.
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![Returns a value Returns a value](/srs71m/images/returns.gif) ![](/srs71m/images/str_button.gif) |
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link |
Link the entry to a library and return the set of
linked entries.
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to |
![Argument may stayunnamed in argument list. Argument may stayunnamed in argument list.](/srs71m/images/unnamed.gif) |
The name of the library to link to.
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![Returns a value Returns a value](/srs71m/images/returns.gif)
Set
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load |
Creates an Object Loader object from the entry.
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loaderName |
![Argument may stayunnamed in argument list. Argument may stayunnamed in argument list.](/srs71m/images/unnamed.gif) |
The name of the loader to use. The loader specifies the
object returned and where the attributes of that object
come from.
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![Returns a value Returns a value](/srs71m/images/returns.gif) ![](/srs71m/images/object_button.gif) |
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name |
The name (ID) of the entry
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![Returns a value Returns a value](/srs71m/images/returns.gif) ![](/srs71m/images/str_button.gif) |
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next |
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parentLib |
Returns parent library if the entry is a subentry.
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![Returns a value Returns a value](/srs71m/images/returns.gif)
Library
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str |
Return the entry as a string. If no tokenList or field is
specified then the whole entry is returned.
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tl |
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A token list can be specified to retrieve.
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field |
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Alternatively a field can be specified and a string for
that field is retrieved.
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format |
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The format to use if there are formats available.
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type |
table |
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sep |
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The seperator to use if there a mulitple values.
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useStream |
n |
y n |
Specifies whether the method should print to a stream
already opened.
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![Returns a value Returns a value](/srs71m/images/returns.gif) ![](/srs71m/images/str_button.gif) |
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tokens |
Returns specified token list from entry.
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name |
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The token to return.
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field |
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The field to get.
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type |
table |
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parent |
n |
n y |
If y, then the field or token is taken from the parent
library.
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![Returns a value Returns a value](/srs71m/images/returns.gif)
TokList
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