Information - Tool Details

   

Analysis Tool Details

   
  The Tool Details page gives details of the analysis tool. These details include a short description, the group to which the tool belongs, details of the options that are available for this tool through the web interface.

Tool Details Page - Reference

   

 
Figure 7.1 Tool Details page for BlastP.

Getting to the Tool Details Page

This page can be reached by clicking on one of the descriptive hyperlinks for the relevant tool, from the Tool Select page.

Details of Analysis Tool

This page contains information about the chosen analysis tool. Headings describing the data are listed on the left. Some of the common data headings are described below.

Name
This is the name of the package.

Comment
This section contains useful comments about the tool, e.g. a short description of how it works, by whom it was developed, etc.

Groups
This indicates the group(s) to which the chosen tool belongs.

Title
This contains a short description of the type of tool, e.g. sequence similarity search.

Primary Options
This area includes options which are required to set up the search, e.g. the name of the current job, where to search, etc.

Minimum Options
This area includes the basic minimum options that must be specified to run the tool.

Required Options
This area includes options which must be specified for consistency with the Emboss command line.

Output Options
This area includes options which control the output of search results.

Search Parameters
This area includes options which are specifically used to control the way searches take place.

Advanced Options
This section contains options that usually do not need to be altered by the user. Experienced users might wish to alter these to define a particularly specific search.

Other Options
This area includes options which have not been described elsewhere, e.g. Path.

Other Information

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