A B C D E F G I J L M O P R S T U V

S

SAXChecker - Class in admin

Uses SAXParser to check workflows' XML files correctness.

SAXChecker() - Constructor for class admin.SAXChecker

SempliceMail - Class in back

SempliceMail() - Constructor for class back.SempliceMail

sendMail() - Method in class back.SempliceMail

separateProcs() - Method in class admin.GetProcsInfo

Separates processors, setting up flag and processor's name, sources and sinks.

setArraylists(ArrayList, ArrayList, ArrayList) - Method in class admin.GetProcsInfo

Sets up the arraylists, containers of whole processors, inputs and outputs.

setAsProcessor() - Method in class admin.GetWfInfo

Adds workflow data into Arraylist of processors, workflow becomes a processor itself.

setAuth(String) - Method in class admin.GetWfInfo

method called from TagExtractor to set up workflow's author.

setConnectToDb(Connection) - Method in class back.Under

setDataIniziale(String) - Method in class back.SempliceMail

setDataIniziale() - Method in class back.Under

setDati(String, String, String, int[]) - Method in class back.Under

setDB(String) - Method in class admin.DBInsert

sets up the params required for the DB connection.

setDBVersion(int, String) - Method in class admin.RetrieveAnnotations

Sets up database parameters for connection and connects.

setDescr(String) - Method in class admin.GetWfInfo

method called from TagExtractor to set up workflow's description.

setFlag(boolean) - Method in class back.Under

setInput(String) - Method in class admin.GetWfInfo

method called from TagExtractor to set up workflow's inputs.

setJText(int, String[][]) - Method in class ProxApplet

Sets how many JTextfields and JLabel are needed, depending on the processors' inputs and output number.

setName(String) - Method in class admin.GetWfInfo

method called from TagExtractor to set up workflow's name.

SetNames - Class in admin

Changes workflows' data names --> For example a name like GetGeneId is changed into "get gene id".

SetNames() - Constructor for class admin.SetNames

setOutput(String) - Method in class admin.GetWfInfo

method called from TagExtractor to set up workflow's outputs.

setParametri(String, String, String, String, String, String, String, String, String, String, String, String[], int, String) - Method in class back.SempliceMail

setParametri(String[], String, String, String, String, String) - Method in class back.Under

setProx(String) - Method in class AppletHelper

This method has as input a long string, composed of all processors data divided by " processor list separator" and populates the arrays proxTemp[] and proxNames[].

setSemantic(String, String) - Method in class admin.GetWfInfo

method called from TagExtractor to set up workflow's semantic values of inputs and outputs.

setStatoEsecuzione(String) - Method in class back.SempliceMail

setVersions(ArrayList) - Method in class admin.DeleteFromDB

Sets up the workflow version to be deleted.

SpringUtilities - Class in <Unnamed>

A 1.4 file that provides utility methods for creating form- or grid-style layouts with SpringLayout.

SpringUtilities() - Constructor for class SpringUtilities

startDocument() - Method in class admin.TagExtractor

The beginning of the XML workflow document.

startElement(String, String, String, Attributes) - Method in class admin.TagExtractor

When a XML tag is open this method calls the class GetWfInfo and values such as "workflowdescription","author","title",sources,sinks,semanticTypes,processors's data are captured.

stateChanged(ChangeEvent) - Method in class ProxApplet

ChangeEvent responsible for the switching between input,output,domains and task JTrees.

SuccessGatewayMessage - Class in bioagent

SuccessGatewayMessage(String, String, String) - Constructor for class bioagent.SuccessGatewayMessage

system() - Method in class back.SempliceMail