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Name

Gene Variations data set (Rel. 14)

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Status The current release has 5936 entries and was indexed 25-Feb-2010.
Description

This is the Gene Variations data set of the IARC TP53 Mutation Database (Rel. 14)
WWW http://www-p53.iarc.fr/index.html
Contact
International Agency for Research on Cancer (IARC) TP53 database,
IARC,
150 Cours Albert Thomas,,
69372 Lyon CEDEX 08, France.

Phone: +33 (0)4 72 73 84 85
Fax : +33 (0)4 72 73 85 75

Data-fields in SRS
Field Name
Short Name
Type
No. of Keys
No. of Entry References
Indexing Date
Status
Mutation ID within this db mid id 5936 5936 25-Feb-2010 ok
Exon which contains the mutation exo index 10 5496 25-Feb-2010 ok
Intron which contains the mutation itr index 10 439 25-Feb-2010 ok
Genomic nucleotide position of mutation nug num 1516 5936 25-Feb-2010 ok
Codon where the mutation is located cno num 395 5936 25-Feb-2010 ok
Occurance of mutation in a Splice site sps index 6 5936 25-Feb-2010 ok
Occurance of mutation in a CpG site cpg index 2 5936 25-Feb-2010 ok
Description and relevant information of mutation des index 301 5936 25-Feb-2010 ok
HGVS coded mutation (coding sequence as reference) cde index 5933 5936 25-Feb-2010 ok
Type/nature of mutation typ index 12 5936 25-Feb-2010 ok
Substitution rates in p53 coding sequence mrt real 74 3538 25-Feb-2010 ok
Wild-type base at the position of the mutation wtb index 18 5936 25-Feb-2010 ok
Mutant_nucleotide mnu index 7 5936 25-Feb-2010 ok
Base sequence of Wild Type codon wtc index 66 5936 25-Feb-2010 ok
Base sequence of Mutant codon muc index 127 5936 25-Feb-2010 ok
Wild Type Aminoacids wta index 23 5936 25-Feb-2010 ok
Mutated Aminoacids mua index 73 5936 25-Feb-2010 ok
Mutation description at the protein level pde index 2946 5936 25-Feb-2010 ok
Effect of the mutation before the encoding eff index 8 5936 25-Feb-2010 ok
Polymorphism plm index 3 5936 25-Feb-2010 ok
SNP validation type val index 15 5936 25-Feb-2010 ok
Link to dbSNP at NCBI snl index 191 5936 25-Feb-2010 ok
Known function of the wild-type residue wrf index 11 5936 25-Feb-2010 ok
Function of domain where mutated residue is located. dof index 10 5936 25-Feb-2010 ok
Structural motif smo index 19 5936 25-Feb-2010 ok
Grantham variation gva real 185 5478 25-Feb-2010 ok
Grantham deviation gdv real 527 2733 25-Feb-2010 ok
AGVGD_class ast index 4 5936 25-Feb-2010 ok
SIFT_class ist index 3 5936 25-Feb-2010 ok
WAF1 transcriptional activity as % of WT activity waf real 1118 2653 25-Feb-2010 ok
MDM2 transcriptional activity as % of WT activity mdm real 1126 2653 25-Feb-2010 ok
BAX transcriptional activity as % of WT activity bax real 1257 2653 25-Feb-2010 ok
h1433s transcriptional activity as % of WT activity h14 real 1122 2653 25-Feb-2010 ok
AIP1 transcriptional activity as % of WT activity aip real 1004 2653 25-Feb-2010 ok
GADD45 transcriptional activity as % of WT activity gad real 980 2653 25-Feb-2010 ok
NOXA transcriptional activity as % of WT activity nox real 1238 2653 25-Feb-2010 ok
P53R2 transcriptional activity as % of WT activity p5r real 1197 2653 25-Feb-2010 ok
Transactivation_class tst index 5 5936 25-Feb-2010 ok
Structure_function_class sst index 3 5936 25-Feb-2010 ok
Dominant-negative activity over wild-type p53 dne index 4 5936 25-Feb-2010 ok
Somatic_count sct real 100 5936 25-Feb-2010 ok
AllText all group 0 0   not indexed
Loaders
Links
From Databank
Entries Linked
To Databank
Entries Linked
Links Total
Indexing Date
TP53_SOMATIC 26206 TP53_MUTATIONS 3950 26206 25-Feb-2010
TP53_CELL_LINES 1402 TP53_MUTATIONS 559 1402 25-Feb-2010
TP53_GERMLINE 2278 TP53_MUTATIONS 235 2278 25-Feb-2010
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
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