II.3  i Files

# # The Icarus base representation for the XML "INTERPRO_TEST" databank. # # NOTES: # 1. Generated automatically by the DTD-to-Icarus translator. # 2. To be edited at least to supply: # a) the XML "INTERPRO_TEST" databank entry element type # (attribute "xmlEntryElementType", class "$Library"); # b) the XML "INTERPRO_TEST" databank field short names # (attribute "short", class "$SrsField"); # c) if missing, the "indexField:$DF_ID" specification within # the index metaphor either for the object or for the attribute # carrying the XML "INTERPRO_TEST" databank entry ID. # 3. Remember to edit the $SRSSITE/srsdb.i file to: # a) include this file; # b) specify the XML "INTERPRO_TEST" databank location; # c) specify the XML "INTERPRO_TEST" databank ID; # and then invoke the "srssection" command in order to make # the XML "INTERPRO_TEST" databank available into the SRS system. # $INTERPRO_TEST_DB=$Library:[INTERPRO_TEST group:$XML_LIBS dataSource:xml # defaultEntryView:$Entries_View defaultEntryView:$INTERPRO_TEST_ENTRY_VIEW format:$INTERPRO_TEST_FORMAT xmlEntryElementType:'interpro' searchName:'interpro_test.xml' ] # # The default table view. # $INTERPRO_TEST_VIEW=$View:[INTERPRO_TEST_VIEW objLoader:$INTERPRO_TEST_LOADER # printEntryList:n # type:entry # layout:@{ # $FileDo:"($Env:SRSSITE)/interpro_test.il" # } ] # # The single entry view. # $INTERPRO_TEST_ENTRY_VIEW=$View:[INTERPRO_TEST_ENTRY_VIEW objLoader:$INTERPRO_TEST_LOADER printEntryList:n type:entry layout:@{ $FileDo:"($Env:SRSROOT)/demo/interpro_test.il" # $FileDo:"($Env:SRSSITE)/interpro_test.il" } ] # # The XML "INTERPRO_TEST" databank flat loader. # $INTERPRO_TEST_LOADER=$LoadClass:[INTERPRO_TEST_LOADER libs:{$INTERPRO_TEST_DB} attrs:{ $LoadAttr:["abstract" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_1]}] # $LoadAttr:["author_list" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_2]}] # $LoadAttr:["book_title" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_3]}] # $LoadAttr:["category" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_4]}] # $LoadAttr:["cite_idref" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_5_1]}] # $LoadAttr:["classification_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_6_1]}] # $LoadAttr:["classification_class_type" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_6_2]}] # $LoadAttr:["db_info_name" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_1]}] # $LoadAttr:["db_info_version" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_2]}] # $LoadAttr:["db_info_file_date" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_3]}] # $LoadAttr:["db_info_entry_count" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_4]}] # $LoadAttr:["db_xref_db" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_8_1]}] # $LoadAttr:["db_xref_version" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_8_2]}] # $LoadAttr:["db_xref_dbkey" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_8_3]}] # $LoadAttr:["db_xref_name" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_8_4]}] # $LoadAttr:["del_ref_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_9_1]}] # $LoadAttr:["description" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_10]}] # $LoadAttr:["example" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_11]}] # $LoadAttr:["interpro_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_12_1]}] $LoadAttr:["interpro_type" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_12_2]}] # $LoadAttr:["interpro_short_name" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_12_3]}] # $LoadAttr:["journal" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_13]}] # $LoadAttr:["location_firstpage" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_14_1]}] # $LoadAttr:["location_lastpage" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_14_2]}] # $LoadAttr:["location_volume" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_14_3]}] # $LoadAttr:["location_issue" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_14_4]}] $LoadAttr:["name" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_15]}] # $LoadAttr:["protein_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_16_1]}] # $LoadAttr:["publication_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_17_1]}] # $LoadAttr:["book_info_english_language" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_18_1]}] # $LoadAttr:["book_info_availability" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_18_2]}] # $LoadAttr:["publisher" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_19]}] # $LoadAttr:["isbn" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_20]}] # $LoadAttr:["reaction" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_21]}] # $LoadAttr:["rel_ref_ipr_ref" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_22_1]}] # $LoadAttr:["rel_ref_type" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_22_2]}] # $LoadAttr:["sec_ac_acc" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_23_1]}] # $LoadAttr:["taxon" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_24]}] # $LoadAttr:["taxon_tax_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_24_1]}] # $LoadAttr:["title" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_25]}] # $LoadAttr:["type" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_26]}] # $LoadAttr:["url" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_27]}] # $LoadAttr:["year" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_28]}] } ] # # The XML "INTERPRO_TEST" databank format. # $INTERPRO_TEST_FORMAT=$LibFormat:[ fields:{ # The following field is required, so please do not remove it. # Also, modify the 'loadPath' if an ID different from the one # retrieved automatically by SRS is required, for example # within views. $Field:[$DF_ID index:id indexToken:xml loadPath:"interpro/@id"] # All the following fields are commented out for convenience. # Please uncomment the ones of interest. $Field:[$DF_INTERPRO_TEST_1 index:str indexToken:xml loadPath:"abstract"] # $Field:[$DF_INTERPRO_TEST_2 index:str indexToken:xml # loadPath:"author_list"] # $Field:[$DF_INTERPRO_TEST_3 index:str indexToken:xml # loadPath:"book_title"] # $Field:[$DF_INTERPRO_TEST_4 index:str indexToken:xml # loadPath:"category"] # $Field:[$DF_INTERPRO_TEST_5_1 index:str indexToken:xml # loadPath:"cite/@idref"] # $Field:[$DF_INTERPRO_TEST_6_1 index:str indexToken:xml # loadPath:"classification/@id"] # $Field:[$DF_INTERPRO_TEST_6_2 index:str indexToken:xml # loadPath:"classification/@class_type"] # $Field:[$DF_INTERPRO_TEST_7_1 index:str indexToken:xml # loadPath:"db_info/@name"] # $Field:[$DF_INTERPRO_TEST_7_2 index:str indexToken:xml # loadPath:"db_info/@version"] # $Field:[$DF_INTERPRO_TEST_7_3 index:str indexToken:xml # loadPath:"db_info/@file_date"] # $Field:[$DF_INTERPRO_TEST_7_4 index:str indexToken:xml # loadPath:"db_info/@entry_count"] # $Field:[$DF_INTERPRO_TEST_8_1 index:str indexToken:xml # loadPath:"db_xref/@db"] # $Field:[$DF_INTERPRO_TEST_8_2 index:str indexToken:xml # loadPath:"db_xref/@version"] # $Field:[$DF_INTERPRO_TEST_8_3 index:str indexToken:xml # loadPath:"db_xref/@dbkey"] # $Field:[$DF_INTERPRO_TEST_8_4 index:str indexToken:xml # loadPath:"db_xref/@name"] # $Field:[$DF_INTERPRO_TEST_9_1 index:str indexToken:xml # loadPath:"del_ref/@id"] # $Field:[$DF_INTERPRO_TEST_10 index:str indexToken:xml # loadPath:"description"] # $Field:[$DF_INTERPRO_TEST_11 index:str indexToken:xml # loadPath:"example"] # $Field:[$DF_INTERPRO_TEST_12_1 index:str indexToken:xml # loadPath:"interpro/@id"] $Field:[$DF_INTERPRO_TEST_12_2 index:str indexToken:xml loadPath:"interpro/@type"] # $Field:[$DF_INTERPRO_TEST_12_3 index:str indexToken:xml # loadPath:"interpro/@short_name"] # $Field:[$DF_INTERPRO_TEST_13 index:str indexToken:xml # loadPath:"journal"] # $Field:[$DF_INTERPRO_TEST_14_1 index:str indexToken:xml # loadPath:"location/@firstpage"] # $Field:[$DF_INTERPRO_TEST_14_2 index:str indexToken:xml # loadPath:"location/@lastpage"] # $Field:[$DF_INTERPRO_TEST_14_3 index:str indexToken:xml # loadPath:"location/@volume"] # $Field:[$DF_INTERPRO_TEST_14_4 index:str indexToken:xml # loadPath:"location/@issue"] $Field:[$DF_INTERPRO_TEST_15 index:str indexToken:xml loadPath:"name"] # $Field:[$DF_INTERPRO_TEST_16_1 index:str indexToken:xml # loadPath:"protein/@id"] # $Field:[$DF_INTERPRO_TEST_17_1 index:str indexToken:xml # loadPath:"publication/@id"] # $Field:[$DF_INTERPRO_TEST_18_1 index:str indexToken:xml # loadPath:"book_info/@english_language"] # $Field:[$DF_INTERPRO_TEST_18_2 index:str indexToken:xml # loadPath:"book_info/@availability"] # $Field:[$DF_INTERPRO_TEST_19 index:str indexToken:xml # loadPath:"publisher"] # $Field:[$DF_INTERPRO_TEST_20 index:str indexToken:xml # loadPath:"isbn"] # $Field:[$DF_INTERPRO_TEST_21 index:str indexToken:xml # loadPath:"reaction"] # $Field:[$DF_INTERPRO_TEST_22_1 index:str indexToken:xml # loadPath:"rel_ref/@ipr_ref"] # $Field:[$DF_INTERPRO_TEST_22_2 index:str indexToken:xml # loadPath:"rel_ref/@type"] # $Field:[$DF_INTERPRO_TEST_23_1 index:str indexToken:xml # loadPath:"sec_ac/@acc"] # $Field:[$DF_INTERPRO_TEST_24 index:str indexToken:xml # loadPath:"taxon"] # $Field:[$DF_INTERPRO_TEST_24_1 index:str indexToken:xml # loadPath:"taxon/@tax_id"] # $Field:[$DF_INTERPRO_TEST_25 index:str indexToken:xml # loadPath:"title"] # $Field:[$DF_INTERPRO_TEST_26 index:str indexToken:xml # loadPath:"type"] # $Field:[$DF_INTERPRO_TEST_27 index:str indexToken:xml # loadPath:"url"] # $Field:[$DF_INTERPRO_TEST_28 index:str indexToken:xml # loadPath:"year"] } fileType:{$INTERPRO_TEST_FILE} syntax:$XML_SYNTAX ] $DF_INTERPRO_TEST_1=$SrsField:["abstract" short:'abstr'] #$DF_INTERPRO_TEST_2=$SrsField:["author_list" short:'????'] #$DF_INTERPRO_TEST_3=$SrsField:["book_title" short:'????'] #$DF_INTERPRO_TEST_4=$SrsField:["category" short:'????'] #$DF_INTERPRO_TEST_5_1=$SrsField:["cite_idref" short:'????'] #$DF_INTERPRO_TEST_6_1=$SrsField:["classification_id" short:'????'] #$DF_INTERPRO_TEST_6_2=$SrsField:["classification_class_type" short:'????'] #$DF_INTERPRO_TEST_7_1=$SrsField:["db_info_name" short:'????'] #$DF_INTERPRO_TEST_7_2=$SrsField:["db_info_version" short:'????'] #$DF_INTERPRO_TEST_7_3=$SrsField:["db_info_file_date" short:'????'] #$DF_INTERPRO_TEST_7_4=$SrsField:["db_info_entry_count" short:'????'] #$DF_INTERPRO_TEST_8_1=$SrsField:["db_xref_db" short:'????'] #$DF_INTERPRO_TEST_8_2=$SrsField:["db_xref_version" short:'????'] #$DF_INTERPRO_TEST_8_3=$SrsField:["db_xref_dbkey" short:'????'] #$DF_INTERPRO_TEST_8_4=$SrsField:["db_xref_name" short:'????'] #$DF_INTERPRO_TEST_9_1=$SrsField:["del_ref_id" short:'????'] #$DF_INTERPRO_TEST_10=$SrsField:["description" short:'????'] #$DF_INTERPRO_TEST_11=$SrsField:["example" short:'????'] #$DF_INTERPRO_TEST_12_1=$SrsField:["interpro_id" short:'????'] $DF_INTERPRO_TEST_12_2=$SrsField:["interpro_type" short:'type'] #$DF_INTERPRO_TEST_12_3=$SrsField:["interpro_short_name" short:'????'] #$DF_INTERPRO_TEST_13=$SrsField:["journal" short:'????'] #$DF_INTERPRO_TEST_14_1=$SrsField:["location_firstpage" short:'????'] #$DF_INTERPRO_TEST_14_2=$SrsField:["location_lastpage" short:'????'] #$DF_INTERPRO_TEST_14_3=$SrsField:["location_volume" short:'????'] #$DF_INTERPRO_TEST_14_4=$SrsField:["location_issue" short:'????'] $DF_INTERPRO_TEST_15=$SrsField:["name" short:'name'] #$DF_INTERPRO_TEST_16_1=$SrsField:["protein_id" short:'????'] #$DF_INTERPRO_TEST_17_1=$SrsField:["publication_id" short:'????'] #$DF_INTERPRO_TEST_18_1=$SrsField:["book_info_english_language" short:'????'] #$DF_INTERPRO_TEST_18_2=$SrsField:["book_info_availability" short:'????'] #$DF_INTERPRO_TEST_19=$SrsField:["publisher" short:'????'] #$DF_INTERPRO_TEST_20=$SrsField:["isbn" short:'????'] #$DF_INTERPRO_TEST_21=$SrsField:["reaction" short:'????'] #$DF_INTERPRO_TEST_22_1=$SrsField:["rel_ref_ipr_ref" short:'????'] #$DF_INTERPRO_TEST_22_2=$SrsField:["rel_ref_type" short:'????'] #$DF_INTERPRO_TEST_23_1=$SrsField:["sec_ac_acc" short:'????'] #$DF_INTERPRO_TEST_24=$SrsField:["taxon" short:'????'] #$DF_INTERPRO_TEST_24_1=$SrsField:["taxon_tax_id" short:'????'] #$DF_INTERPRO_TEST_25=$SrsField:["title" short:'????'] #$DF_INTERPRO_TEST_26=$SrsField:["type" short:'????'] #$DF_INTERPRO_TEST_27=$SrsField:["url" short:'????'] #$DF_INTERPRO_TEST_28=$SrsField:["year" short:'????'] # # The XML "INTERPRO_TEST" databank file descriptor. # $INTERPRO_TEST_FILE=$FileType:[xml typeName:xml maxline:1024 fieldTokens:entry fipVar:entryFip ] # # The index metaphors used to index the data of the XML "INTERPRO_TEST" # databank. # # NOTES: # 1. Generated automatically by the DTD-to-Icarus translator. # 2. When modified, invoke the "srssection" command to commit # the modifications into the SRS system. # 3. If missing, remember to add the "indexField:$DF_ID" # specification within the index metaphor for the element # or attribute carrying the XML "INTERPRO_TEST" # databank entry ID. # $OIM_INTERPRO_TEST_1=$ObjIndexMetaphor:[className:"abstract" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_1 ] #$OIM_INTERPRO_TEST_2=$ObjIndexMetaphor:[className:"author_list" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_2 #] #$OIM_INTERPRO_TEST_3=$ObjIndexMetaphor:[className:"book_title" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_3 #] #$OIM_INTERPRO_TEST_4=$ObjIndexMetaphor:[className:"category" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_4 #] #$OIM_INTERPRO_TEST_5=$ObjIndexMetaphor:[className:"cite" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"idref" # indexField:$DF_INTERPRO_TEST_5_1 # ] # } #] #$OIM_INTERPRO_TEST_6=$ObjIndexMetaphor:[className:"classification" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"id" # indexField:$DF_INTERPRO_TEST_6_1 # ] # $AttrIndexMetaphor:[attrName:"class_type" # indexField:$DF_INTERPRO_TEST_6_2 # ] # } #] #$OIM_INTERPRO_TEST_7=$ObjIndexMetaphor:[className:"db_info" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"name" # indexField:$DF_INTERPRO_TEST_7_1 # ] # $AttrIndexMetaphor:[attrName:"version" # indexField:$DF_INTERPRO_TEST_7_2 # ] # $AttrIndexMetaphor:[attrName:"file_date" # indexField:$DF_INTERPRO_TEST_7_3 # ] # $AttrIndexMetaphor:[attrName:"entry_count" # indexField:$DF_INTERPRO_TEST_7_4 # ] # } #] #$OIM_INTERPRO_TEST_8=$ObjIndexMetaphor:[className:"db_xref" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"db" # indexField:$DF_INTERPRO_TEST_8_1 # ] # $AttrIndexMetaphor:[attrName:"version" # indexField:$DF_INTERPRO_TEST_8_2 # ] # $AttrIndexMetaphor:[attrName:"dbkey" # indexField:$DF_INTERPRO_TEST_8_3 # ] # $AttrIndexMetaphor:[attrName:"name" # indexField:$DF_INTERPRO_TEST_8_4 # ] # } #] #$OIM_INTERPRO_TEST_9=$ObjIndexMetaphor:[className:"del_ref" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"id" # indexField:$DF_INTERPRO_TEST_9_1 # ] # } #] #$OIM_INTERPRO_TEST_10=$ObjIndexMetaphor:[className:"description" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_10 #] #$OIM_INTERPRO_TEST_11=$ObjIndexMetaphor:[className:"example" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_11 #] $OIM_INTERPRO_TEST_12=$ObjIndexMetaphor:[className:"interpro" nameSpace:$INTERPRO_TEST_DB attrMetaphors:{ $AttrIndexMetaphor:[attrName:"id" indexField:$DF_ID ] $AttrIndexMetaphor:[attrName:"type" indexField:$DF_INTERPRO_TEST_12_2 ] # $AttrIndexMetaphor:[attrName:"short_name" # indexField:$DF_INTERPRO_TEST_12_3 # ] } ] #$OIM_INTERPRO_TEST_13=$ObjIndexMetaphor:[className:"journal" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_13 #] #$OIM_INTERPRO_TEST_14=$ObjIndexMetaphor:[className:"location" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"firstpage" # indexField:$DF_INTERPRO_TEST_14_1 # ] # $AttrIndexMetaphor:[attrName:"lastpage" # indexField:$DF_INTERPRO_TEST_14_2 # ] # $AttrIndexMetaphor:[attrName:"volume" # indexField:$DF_INTERPRO_TEST_14_3 # ] # $AttrIndexMetaphor:[attrName:"issue" # indexField:$DF_INTERPRO_TEST_14_4 # ] # } #] $OIM_INTERPRO_TEST_15=$ObjIndexMetaphor:[className:"name" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_15 ] #$OIM_INTERPRO_TEST_16=$ObjIndexMetaphor:[className:"protein" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"id" # indexField:$DF_INTERPRO_TEST_16_1 # ] # } #] #$OIM_INTERPRO_TEST_17=$ObjIndexMetaphor:[className:"publication" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"id" # indexField:$DF_INTERPRO_TEST_17_1 # ] # } #] #$OIM_INTERPRO_TEST_18=$ObjIndexMetaphor:[className:"book_info" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"english_language" # indexField:$DF_INTERPRO_TEST_18_1 # ] # $AttrIndexMetaphor:[attrName:"availability" # indexField:$DF_INTERPRO_TEST_18_2 # ] # } #] #$OIM_INTERPRO_TEST_19=$ObjIndexMetaphor:[className:"publisher" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_19 #] #$OIM_INTERPRO_TEST_20=$ObjIndexMetaphor:[className:"isbn" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_20 #] #$OIM_INTERPRO_TEST_21=$ObjIndexMetaphor:[className:"reaction" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_21 #] #$OIM_INTERPRO_TEST_22=$ObjIndexMetaphor:[className:"rel_ref" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"ipr_ref" # indexField:$DF_INTERPRO_TEST_22_1 # ] # $AttrIndexMetaphor:[attrName:"type" # indexField:$DF_INTERPRO_TEST_22_2 # ] # } #] #$OIM_INTERPRO_TEST_23=$ObjIndexMetaphor:[className:"sec_ac" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"acc" # indexField:$DF_INTERPRO_TEST_23_1 # ] # } #] #$OIM_INTERPRO_TEST_24=$ObjIndexMetaphor:[className:"taxon" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_24 # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"tax_id" # indexField:$DF_INTERPRO_TEST_24_1 # ] # } #] #$OIM_INTERPRO_TEST_25=$ObjIndexMetaphor:[className:"title" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_25 #] #$OIM_INTERPRO_TEST_26=$ObjIndexMetaphor:[className:"type" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_26 #] #$OIM_INTERPRO_TEST_27=$ObjIndexMetaphor:[className:"url" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_27 #] #$OIM_INTERPRO_TEST_28=$ObjIndexMetaphor:[className:"year" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_28 #] # # The XML "INTERPRO_TEST" databank default attribute values. DO NOT TOUCH! # $INTERPRO_TEST_AllAttributeValues={ 'cite'{ 'idref''' } 'classification'{ 'id''' 'class_type''' } 'db_info'{ 'name''' 'version''' 'file_date''' 'entry_count''' } 'db_xref'{ 'db''' 'version''' 'dbkey''' 'name''' } 'del_ref'{ 'id''' } 'interpro'{ 'id''' 'type''' 'short_name''' } 'location'{ 'firstpage''' 'lastpage''' 'volume''' 'issue''' } 'protein'{ 'id''' } 'publication'{ 'id''' } 'book_info'{ 'english_language''yes' 'availability''publisher' } 'rel_ref'{ 'ipr_ref''' 'type''' } 'sec_ac'{ 'acc''' } 'taxon'{ 'tax_id''' } } # # The XML "INTERPRO_TEST" databank general parsed entities. DO NOT TOUCH! # $INTERPRO_TEST_GeneralParsedEntities={ 'pub''publisher' 'ol''on-line' 'dlib''domestic_library' 'flib''foreign_library' 'oop''out_of_print' 'ea''et al.' } # # The XML "INTERPRO_TEST" databank child element list. DO NOT TOUCH! # $INTERPRO_TEST_ChildElementList={ 'abstract'{ 'cite''' 'taxon''' 'db_xref''' 'reaction''' } 'author_list'{} 'book_title'{} 'category'{} 'child_list'{ 'rel_ref''' } 'cite'{} 'class_list'{ 'classification''' } 'classification'{ 'category''' 'description''' } 'contains'{ 'rel_ref''' } 'db_info'{} 'db_xref'{} 'del_ref'{ 'description''' } 'deleted_entries'{ 'del_ref''' } 'description'{} 'example'{ 'cite''' 'db_xref''' } 'example_list'{ 'example''' } 'external_doc_list'{ 'db_xref''' } 'found_in'{ 'rel_ref''' } 'interpro'{ 'name''' 'sec_list''' 'abstract''' 'class_list''' 'example_list''' 'pub_list''' 'contains''' 'external_doc_list''' 'member_list''' 'parent_list''' 'child_list''' 'found_in''' } 'interprodb'{ 'release''' 'interpro''' } 'journal'{} 'location'{} 'member_list'{ 'db_xref''' } 'name'{} 'parent_list'{ 'rel_ref''' } 'protein'{} 'pub_list'{ 'publication''' } 'publication'{ 'author_list''' 'title''' 'db_xref''' 'journal''' 'book_title''' 'book_info''' 'location''' 'year''' 'url''' } 'book_info'{ 'abstract''' 'publisher''' 'isbn''' } 'publisher'{} 'isbn'{} 'reaction'{} 'rel_ref'{} 'release'{ 'db_info''' } 'sec_ac'{} 'sec_list'{ 'sec_ac''' } 'taxon'{} 'title'{} 'type'{} 'url'{} 'year'{} }

# # The Icarus base representation for the XML "INTERPRO_TEST" databank. # # NOTES: # 1. Generated automatically by the DTD-to-Icarus translator. # 2. To be edited at least to supply: # a) the XML "INTERPRO_TEST" databank entry element type # (attribute "xmlEntryElementType", class "$Library"); # b) the XML "INTERPRO_TEST" databank field short names # (attribute "short", class "$SrsField"); # c) if missing, the "indexField:$DF_ID" specification within # the index metaphor either for the object or for the attribute # carrying the XML "INTERPRO_TEST" databank entry ID. # 3. Remember to edit the $SRSSITE/srsdb.i file to: # a) include this file; # b) specify the XML "INTERPRO_TEST" databank location; # c) specify the XML "INTERPRO_TEST" databank ID; # and then invoke the "srssection" command in order to make # the XML "INTERPRO_TEST" databank available into the SRS system. # $INTERPRO_TEST_DB=$Library:[INTERPRO_TEST group:$XML_LIBS dataSource:xml # Uncomment only one of the two defaultEntryView attributes below. # This defaultEntryView attribute gives an unformatted entry view. # defaultEntryView:$Entries_View # This defaultEntryView attribute uses an Icarus layout (.il) file # to generate a nicely formatted entry view. defaultEntryView:$INTERPRO_TEST_ENTRY_VIEW format:$INTERPRO_TEST_FORMAT xmlEntryElementType:'interpro' searchName:'interpro_test.xml' # To activate multiple file processing, comment out the line above # and uncomment the following two lines. # searchName:'*.xml' # parallelType:Files subEntries:{$INTERPRO_TEST_EXAMPLES_DB $INTERPRO_TEST_PUBLICATIONS_DB} xmlSubentryPolicy:makeNew ] # EXAMPLES subentry library. $INTERPRO_TEST_EXAMPLES_DB=$Library:[INTERPRO_TEST_EXAMPLES parent:$INTERPRO_TEST_DB dataSource:xml format:$INTERPRO_TEST_EXAMPLES_FORMAT xmlEntryElementType:'example' ] # PUBLICATIONS subentry library. $INTERPRO_TEST_PUBLICATIONS_DB=$Library:[INTERPRO_TEST_PUBLICATIONS parent:$INTERPRO_TEST_DB dataSource:xml format:$INTERPRO_TEST_PUBLICATIONS_FORMAT xmlEntryElementType:'publication' xmlSubentryPolicy:makeNew ] # # The default table view. # $INTERPRO_TEST_VIEW=$View:[INTERPRO_TEST_VIEW objLoader:$INTERPRO_TEST_LOADER # printEntryList:n # type:entry # layout:@{ # $FileDo:"($Env:SRSSITE)/interpro_test.il" # } ] # # The single entry view. # $INTERPRO_TEST_ENTRY_VIEW=$View:[INTERPRO_TEST_ENTRY_VIEW objLoader:$INTERPRO_TEST_LOADER printEntryList:n type:entry layout:@{ $FileDo:"($Env:SRSDEMO)/interpro_test.il" } ] ################################################# # The XML "INTERPRO_TEST" databank flat loader. # ################################################# # # The "INTERPRO_TEST" main loader. # $INTERPRO_TEST_LOADER=$LoadClass:[INTERPRO_TEST_LOADER libs:{$INTERPRO_TEST_DB} attrs:{ # The following $LoadAttr objects were added to demonstrate the # enhanced loadPath syntax. # $LoadAttr object added for demonstrating indexing of a single # source field into multiple target fields using an indexField list. $LoadAttr:["interpro_id" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_12_1]}] # $LoadAttr objects added for demonstrating special path syntax. # absolute path: '/interpro/abstract/cite/@idref' # relative path: '//abstract/cite/@idref' # illegal path: '////interpro//abstract///cite/@idref' # single element path: 'cite/@idref' $LoadAttr:["absolute_path" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_ABSOLUTE_PATH]}] $LoadAttr:["relative_path" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_RELATIVE_PATH]}] $LoadAttr:["illegal_path" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_ILLEGAL_PATH]}] $LoadAttr:["single_element_path" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_SINGLE_ELEMENT_PATH]}] # $LoadAttr objects added for demonstrating conditional indexing. $LoadAttr:["shortname_domain" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_12_3_Domain]}] $LoadAttr:["shortname_family" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_12_3_Family]}] # $LoadAttr objects added for demonstrating loadPath list syntax. $LoadAttr:["mixed_list_1" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_MIXED_LIST_1]}] $LoadAttr:["mixed_list_2" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_MIXED_LIST_2]}] # $LoadAttr objects added for demonstrating xsl:copy-of and xsl:value-of syntax. $LoadAttr:["copy_of_abstract" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_1_COPY_OF]}] $LoadAttr:["value_of_abstract" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_1_VALUE_OF]}] # "Regular" $LoadAttr objects generated automatically by dtd2ica. $LoadAttr:["abstract" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_1]}] $LoadAttr:["cite_idref" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_5_1]}] $LoadAttr:["db_xref_db" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_1]}] $LoadAttr:["db_xref_dbkey" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_3]}] $LoadAttr:["interpro_type" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_12_2]}] $LoadAttr:["name" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_15]}] $LoadAttr:["reaction" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_21]}] $LoadAttr:["taxon" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_24]}] $LoadAttr:["taxon_tax_id" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_24_1]}] # $LoadAttr composition loader objects for the subentry libraries. $LoadAttr:["PUBLICATIONS" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_PUBLICATIONS_LOADER]}] $LoadAttr:["EXAMPLES" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_EXAMPLES_LOADER]}] # $LoadAttr object added for demonstrating the wholeEntry token. $LoadAttr:[WholeEntry type:string load:{$Tok:[wholeEntry:y]}] } ] # # The "INTERPRO_TEST_EXAMPLES" subentry loader. # $INTERPRO_TEST_EXAMPLES_LOADER=$LoadClass:[INTERPRO_TEST_EXAMPLES_LOADER libs:{$INTERPRO_TEST_EXAMPLES_DB} tin:example attrs:{ $LoadAttr:["example" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_11]}] # New db_xref fields were added to support separate indexing and # loading for the EXAMPLES and PUBLICATIONS subentry libraries. $LoadAttr:["db_xref_db_exa" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_1_EXAMPLES]}] $LoadAttr:["db_xref_dbkey_exa" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_3_EXAMPLES]}] } ] # # The "INTERPRO_TEST_PUBLICATIONS" subentry loader. # $INTERPRO_TEST_PUBLICATIONS_LOADER=$LoadClass:[INTERPRO_TEST_PUBLICATIONS_LOADER libs:{$INTERPRO_TEST_PUBLICATIONS_DB} tin:publication attrs:{ # The following $LoadAttr objects were added to demonstrate the # enhanced loadPath syntax. # $LoadAttr object added for demonstrating deprecated loadPath syntax. $LoadAttr:["deprecated_syntax_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_PUBLICATIONS_DEPRECATED_SYNTAX]}] # $LoadAttr object added for demonstrating loadPath list syntax. $LoadAttr:["attribute_list_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_PUBLICATIONS_ATTRIBUTE_LIST]}] # $LoadAttr object added for demonstrating special loadPath target syntax ('@*' '*'). $LoadAttr:["all_attributes_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_PUBLICATIONS_ALL_ATTRIBUTES]}] $LoadAttr:["all_child_elements_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_PUBLICATIONS_ALL_CHILD_ELEMENTS]}] # $LoadAttr objects added for demonstrating xsl:copy-of and xsl:value-of syntax. $LoadAttr:["copy-of_book_info" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_PUBLICATIONS_COPY_OF]}] $LoadAttr:["value-of_book_info" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_PUBLICATIONS_VALUE_OF]}] # New abstract, cite, and db_xref fields were added to support separate # indexing and loading for the EXAMPLES and PUBLICATIONS subentry libraries. $LoadAttr:["abstract_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_1_PUBLICATIONS]}] $LoadAttr:["cite_idref_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_5_1_PUBLICATIONS]}] $LoadAttr:["db_xref_db_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_1_PUBLICATIONS]}] $LoadAttr:["db_xref_dbkey_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_3_PUBLICATIONS]}] # "Regular" $LoadAttr objects generated automatically by dtd2ica. $LoadAttr:["author_list" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_2]}] $LoadAttr:["book_title" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_3]}] $LoadAttr:["journal" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_13]}] $LoadAttr:["location_firstpage" type:int card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_14_1]}] $LoadAttr:["location_lastpage" type:int card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_14_2]}] $LoadAttr:["location_volume" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_14_3]}] $LoadAttr:["location_issue" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_14_4]}] $LoadAttr:["publication_id" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_17_1]}] $LoadAttr:["book_info_english_language" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_18_1]}] $LoadAttr:["book_info_availability" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_18_2]}] $LoadAttr:["publisher" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_19]}] $LoadAttr:["isbn" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_20]}] $LoadAttr:["title" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_25]}] $LoadAttr:["url" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_27]}] $LoadAttr:["year" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_28]}] # To demonstrate loading of sub-subentries, uncomment the following # two lines. If this sub-subentry loader is used, it will cause the # HTML table view to become unsynchronized. # $LoadAttr:[REL_REFS type:object card:multi #load:$Tok:[loader:$INTERPRO_TEST_PUBLICATIONS_RELREFS_LOADER]] } ] # # The "INTERPRO_TEST_PUBLICATIONS_RELREFS" subentry loader. # $INTERPRO_TEST_PUBLICATIONS_RELREFS_LOADER=$LoadClass:[ INTERPRO_TEST_PUBLICATIONS_RELREFS_LOADER libs:{$INTERPRO_TEST_PUBLICATIONS_DB} tin:rel_ref attrs:{ $LoadAttr:[rel_ref_ipr_ref type:string load:{$Tok:[field:$DF_INTERPRO_TEST_22_1_PUBLICATIONS]}] } ] # "Leftover" $LoadAttr objects. # $LoadAttr:["category" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_4]}] # $LoadAttr:["classification_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_6_1]}] # $LoadAttr:["classification_class_type" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_6_2]}] # $LoadAttr:["db_info_name" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_1]}] # $LoadAttr:["db_info_version" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_2]}] # $LoadAttr:["db_info_file_date" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_3]}] # $LoadAttr:["db_info_entry_count" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_4]}] # $LoadAttr:["db_xref_version" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_8_2]}] # $LoadAttr:["db_xref_name" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_8_4]}] # $LoadAttr:["del_ref_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_9_1]}] # $LoadAttr:["description" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_10]}] # $LoadAttr:["interpro_short_name" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_12_3]}] # $LoadAttr:["protein_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_16_1]}] # $LoadAttr:["rel_ref_ipr_ref" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_22_1]}] # $LoadAttr:["rel_ref_type" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_22_2]}] # $LoadAttr:["sec_ac_acc" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_23_1]}] # $LoadAttr:["type" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_26]}] ######################################################################### # The components of the XML "INTERPRO_TEST" databank structured loader. # ######################################################################### # The original abstract loader generated by dtd2ica. $INTERPRO_TEST_LOADER_abstract=$LoadClass:["INTERPRO_TEST_LOADER_abstract" libs:{$INTERPRO_TEST_DB} tin:"abstract" attrs:{ $LoadAttr:["abstract" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_1]}] $LoadAttr:["cite" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_cite]}] $LoadAttr:["taxon" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_taxon]}] $LoadAttr:["db_xref" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_db_xref]}] $LoadAttr:["reaction" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_reaction]}] } ] # A new loader for abstract elements belonging to book_info elements. $INTERPRO_TEST_LOADER_abstract_PUBLICATIONS=$LoadClass:[ "INTERPRO_TEST_LOADER_abstract_PUBLICATIONS" libs:{$INTERPRO_TEST_DB} tin:"abstract" attrs:{ $LoadAttr:["abstract_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_1_PUBLICATIONS]}] $LoadAttr:["cite_pub" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_cite_PUBLICATIONS]}] } ] $INTERPRO_TEST_LOADER_author_list=$LoadClass:["INTERPRO_TEST_LOADER_author_list" libs:{$INTERPRO_TEST_DB} tin:"author_list" attrs:{ $LoadAttr:["author_list" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_2]}] } ] $INTERPRO_TEST_LOADER_book_title=$LoadClass:["INTERPRO_TEST_LOADER_book_title" libs:{$INTERPRO_TEST_DB} tin:"book_title" attrs:{ $LoadAttr:["book_title" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_3]}] } ] #$INTERPRO_TEST_LOADER_category=$LoadClass:["INTERPRO_TEST_LOADER_category" # libs:{$INTERPRO_TEST_DB} # tin:"category" # attrs:{ # $LoadAttr:["category" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_4]}] # } #] #$INTERPRO_TEST_LOADER_child_list=$LoadClass:["INTERPRO_TEST_LOADER_child_list" # libs:{$INTERPRO_TEST_DB} # tin:"child_list" # attrs:{ # $LoadAttr:["rel_ref" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_rel_ref]}] # } #] # Original loader for cite/@idref attributes belonging to abstract elements. $INTERPRO_TEST_LOADER_cite=$LoadClass:["INTERPRO_TEST_LOADER_cite" libs:{$INTERPRO_TEST_DB} tin:"cite" attrs:{ $LoadAttr:["cite_idref" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_5_1]}] } ] # Special loader for cite/@idref attributes belonging to book_info elements. $INTERPRO_TEST_LOADER_cite_PUBLICATIONS=$LoadClass:[ "INTERPRO_TEST_LOADER_cite_PUBLICATIONS" libs:{$INTERPRO_TEST_DB} tin:"cite" attrs:{ $LoadAttr:["cite_idref_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_5_1_PUBLICATIONS]}] } ] #$INTERPRO_TEST_LOADER_class_list=$LoadClass:["INTERPRO_TEST_LOADER_class_list" # libs:{$INTERPRO_TEST_DB} # tin:"class_list" # attrs:{ # $LoadAttr:["classification" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_classification]}] # } #] #$INTERPRO_TEST_LOADER_classification=$LoadClass:["INTERPRO_TEST_LOADER_classification" # libs:{$INTERPRO_TEST_DB} # tin:"classification" # attrs:{ # $LoadAttr:["classification_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_6_1]}] # $LoadAttr:["classification_class_type" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_6_2]}] # $LoadAttr:["category" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_category]}] # $LoadAttr:["description" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_description]}] # } #] #$INTERPRO_TEST_LOADER_contains=$LoadClass:["INTERPRO_TEST_LOADER_contains" # libs:{$INTERPRO_TEST_DB} # tin:"contains" # attrs:{ # $LoadAttr:["rel_ref" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_rel_ref]}] # } #] #$INTERPRO_TEST_LOADER_db_info=$LoadClass:["INTERPRO_TEST_LOADER_db_info" # libs:{$INTERPRO_TEST_DB} # tin:"db_info" # attrs:{ # $LoadAttr:["db_info_name" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_1]}] # $LoadAttr:["db_info_version" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_2]}] # $LoadAttr:["db_info_file_date" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_3]}] # $LoadAttr:["db_info_entry_count" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_7_4]}] # } #] # Original db_xref loader generated by dtd2ica. $INTERPRO_TEST_LOADER_db_xref=$LoadClass:["INTERPRO_TEST_LOADER_db_xref" libs:{$INTERPRO_TEST_DB} tin:"db_xref" attrs:{ $LoadAttr:["db_xref_db" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_1]}] $LoadAttr:["db_xref_dbkey" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_3]}] # $LoadAttr:["db_xref_version" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_8_2]}] # $LoadAttr:["db_xref_name" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_8_4]}] } ] # New loader for db_xref elements belonging to example elements. $INTERPRO_TEST_LOADER_db_xref_EXAMPLES=$LoadClass:[INTERPRO_TEST_LOADER_db_xref_EXAMPLES libs:{$INTERPRO_TEST_DB} tin:"db_xref" attrs:{ # New db_xref fields were added to support separate indexing # and loading for the EXAMPLES subentry library. $LoadAttr:["db_xref_db_exa" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_1_EXAMPLES]}] $LoadAttr:["db_xref_dbkey_exa" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_3_EXAMPLES]}] } ] # New loader for db_xref elements belonging to publication elements. $INTERPRO_TEST_LOADER_db_xref_PUBLICATIONS=$LoadClass:[ INTERPRO_TEST_LOADER_db_xref_PUBLICATIONS libs:{$INTERPRO_TEST_DB} tin:"db_xref" attrs:{ # New db_xref fields were added to support separate indexing # and loading for the PUBLICATIONS subentry library. $LoadAttr:["db_xref_db_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_1_PUBLICATIONS]}] $LoadAttr:["db_xref_dbkey_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_8_3_PUBLICATIONS]}] } ] #$INTERPRO_TEST_LOADER_del_ref=$LoadClass:["INTERPRO_TEST_LOADER_del_ref" # libs:{$INTERPRO_TEST_DB} # tin:"del_ref" # attrs:{ # $LoadAttr:["del_ref_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_9_1]}] # $LoadAttr:["description" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_description]}] # } #] #$INTERPRO_TEST_LOADER_deleted_entries=$LoadClass:["INTERPRO_TEST_LOADER_deleted_entries" # libs:{$INTERPRO_TEST_DB} # tin:"deleted_entries" # attrs:{ # $LoadAttr:["del_ref" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_del_ref]}] # } #] #$INTERPRO_TEST_LOADER_description=$LoadClass:["INTERPRO_TEST_LOADER_description" # libs:{$INTERPRO_TEST_DB} # tin:"description" # attrs:{ # $LoadAttr:["description" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_10]}] # } #] $INTERPRO_TEST_LOADER_example=$LoadClass:["INTERPRO_TEST_LOADER_example" # The value of the libs attribute was changed to enable this # structured loader to be used for loading EXAMPLES subentries. libs:{$INTERPRO_TEST_EXAMPLES_DB} tin:"example" attrs:{ $LoadAttr:["example" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_11]}] # $LoadAttr:["cite" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_cite]}] # A new db_xref loader was added to support separate # loading for the EXAMPLES subentry. $LoadAttr:["db_xref_exa" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_db_xref_EXAMPLES]}] } ] #$INTERPRO_TEST_LOADER_example_list=$LoadClass:["INTERPRO_TEST_LOADER_example_list" # libs:{$INTERPRO_TEST_DB} # tin:"example_list" # attrs:{ # $LoadAttr:["example" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_example]}] # } #] #$INTERPRO_TEST_LOADER_external_doc_list=$LoadClass:[ "INTERPRO_TEST_LOADER_external_doc_list" # libs:{$INTERPRO_TEST_DB} # tin:"external_doc_list" # attrs:{ # $LoadAttr:["db_xref" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_db_xref]}] # } #] #$INTERPRO_TEST_LOADER_found_in=$LoadClass:["INTERPRO_TEST_LOADER_found_in" # libs:{$INTERPRO_TEST_DB} # tin:"found_in" # attrs:{ # $LoadAttr:["rel_ref" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_rel_ref]}] # } #] $INTERPRO_TEST_LOADER_interpro=$LoadClass:["INTERPRO_TEST_LOADER_interpro" libs:{$INTERPRO_TEST_DB} tin:"interpro" attrs:{ $LoadAttr:["interpro_id" type:string card:mono load:{$Tok:[field:$DF_INTERPRO_TEST_12_1]}] # $LoadAttr objects added for demonstrating conditional indexing. $LoadAttr:["shortname_domain" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_12_3_Domain]}] $LoadAttr:["shortname_family" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_12_3_Family]}] # "Regular" $LoadAttr objects generated automatically by dtd2ica. $LoadAttr:["interpro_type" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_12_2]}] $LoadAttr:["abstract" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_abstract]}] $LoadAttr:["name" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_name]}] # $LoadAttr:["sec_list" type:object card:multi #load:{$Tok:[loader:$INTERPRO_TEST_LOADER_sec_list]}] # $LoadAttr:["class_list" type:object card:multi #load:{$Tok:[loader:$INTERPRO_TEST_LOADER_class_list]}] # $LoadAttr:["example_list" type:object card:multi #load:{$Tok:[loader:$INTERPRO_TEST_LOADER_example_list]}] # $LoadAttr:["pub_list" type:object card:multi #load:{$Tok:[loader:$INTERPRO_TEST_LOADER_pub_list]}] # $LoadAttr:["external_doc_list" type:object card:multi #load:{$Tok:[loader:$INTERPRO_TEST_LOADER_external_doc_list]}] # $LoadAttr:["member_list" type:object card:multi #load:{$Tok:[loader:$INTERPRO_TEST_LOADER_member_list]}] # $LoadAttr:["parent_list" type:object card:multi #load:{$Tok:[loader:$INTERPRO_TEST_LOADER_parent_list]}] # $LoadAttr:["child_list" type:object card:multi #load:{$Tok:[loader:$INTERPRO_TEST_LOADER_child_list]}] # $LoadAttr:["contains" type:object card:multi #load:{$Tok:[loader:$INTERPRO_TEST_LOADER_contains]}] # $LoadAttr:["found_in" type:object card:multi #load:{$Tok:[loader:$INTERPRO_TEST_LOADER_found_in]}] # $LoadAttr composition loader objects added to "skip over" the # example_list and pub_list structure-only elements. $LoadAttr:["example" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_example]}] $LoadAttr:["publication" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_publication]}] } ] #$INTERPRO_TEST_LOADER_interprodb=$LoadClass:["INTERPRO_TEST_LOADER_interprodb" # libs:{$INTERPRO_TEST_DB} # tin:"interprodb" # attrs:{ # $LoadAttr:["release" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_release]}] # $LoadAttr:["interpro" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_interpro]}] # } #] $INTERPRO_TEST_LOADER_journal=$LoadClass:["INTERPRO_TEST_LOADER_journal" libs:{$INTERPRO_TEST_DB} tin:"journal" attrs:{ $LoadAttr:["journal" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_13]}] } ] $INTERPRO_TEST_LOADER_location=$LoadClass:["INTERPRO_TEST_LOADER_location" libs:{$INTERPRO_TEST_DB} tin:"location" attrs:{ $LoadAttr:["location_firstpage" type:int card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_14_1]}] $LoadAttr:["location_lastpage" type:int card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_14_2]}] $LoadAttr:["location_volume" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_14_3]}] $LoadAttr:["location_issue" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_14_4]}] } ] #$INTERPRO_TEST_LOADER_member_list=$LoadClass:["INTERPRO_TEST_LOADER_member_list" # libs:{$INTERPRO_TEST_DB} # tin:"member_list" # attrs:{ # $LoadAttr:["db_xref" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_db_xref]}] # } #] $INTERPRO_TEST_LOADER_name=$LoadClass:["INTERPRO_TEST_LOADER_name" libs:{$INTERPRO_TEST_DB} tin:"name" attrs:{ $LoadAttr:["name" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_15]}] } ] #$INTERPRO_TEST_LOADER_parent_list=$LoadClass:["INTERPRO_TEST_LOADER_parent_list" # libs:{$INTERPRO_TEST_DB} # tin:"parent_list" # attrs:{ # $LoadAttr:["rel_ref" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_rel_ref]}] # } #] #$INTERPRO_TEST_LOADER_protein=$LoadClass:["INTERPRO_TEST_LOADER_protein" # libs:{$INTERPRO_TEST_DB} # tin:"protein" # attrs:{ # $LoadAttr:["protein_id" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_16_1]}] # } #] #$INTERPRO_TEST_LOADER_pub_list=$LoadClass:["INTERPRO_TEST_LOADER_pub_list" # libs:{$INTERPRO_TEST_DB} # tin:"pub_list" # attrs:{ # $LoadAttr:["publication" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_publication]}] # } #] $INTERPRO_TEST_LOADER_publication=$LoadClass:["INTERPRO_TEST_LOADER_publication" # The value of the libs attribute was changed to enable this # structured loader to be used for loading PUBLICATIONS subentries. libs:{$INTERPRO_TEST_PUBLICATIONS_DB} tin:"publication" attrs:{ $LoadAttr:["publication_id" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_17_1]}] $LoadAttr:["author_list" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_author_list]}] $LoadAttr:["title" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_title]}] # A new db_xref loader was added to support separate # loading for the PUBLICATIONS subentry. $LoadAttr:["db_xref_pub" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_db_xref_PUBLICATIONS]}] $LoadAttr:["journal" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_journal]}] $LoadAttr:["book_title" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_book_title]}] # $LoadAttr object added for demonstrating the all elements (*) loadPath syntax. $LoadAttr:["all_child_elements_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_PUBLICATIONS_ALL_CHILD_ELEMENTS]}] $LoadAttr:["book_info" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_book_info]}] $LoadAttr:["location" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_location]}] $LoadAttr:["year" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_year]}] $LoadAttr:["url" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_url]}] # $LoadAttr composition loader object added to "skip over" the child_list # structure-only element. $LoadAttr:["rel_ref_pub" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_rel_ref_PUBLICATIONS]}] } ] $INTERPRO_TEST_LOADER_book_info=$LoadClass:["INTERPRO_TEST_LOADER_book_info" libs:{$INTERPRO_TEST_DB} tin:"book_info" attrs:{ # A new abstract loader was added to support separate # loading for the PUBLICATIONS subentry. $LoadAttr:["abstract_pub" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_abstract_PUBLICATIONS]}] # $LoadAttr objects added for demonstrating xsl:copy-of and xsl:value-of syntax. $LoadAttr:["copy-of_book_info" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_PUBLICATIONS_COPY_OF]}] $LoadAttr:["value-of_book_info" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_PUBLICATIONS_VALUE_OF]}] $LoadAttr:["publisher" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_publisher]}] $LoadAttr:["isbn" type:object card:multi load:{$Tok:[loader:$INTERPRO_TEST_LOADER_isbn]}] } ] $INTERPRO_TEST_LOADER_publisher=$LoadClass:["INTERPRO_TEST_LOADER_publisher" libs:{$INTERPRO_TEST_DB} tin:"publisher" attrs:{ $LoadAttr:["publisher" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_19]}] } ] $INTERPRO_TEST_LOADER_isbn=$LoadClass:["INTERPRO_TEST_LOADER_isbn" libs:{$INTERPRO_TEST_DB} tin:"isbn" attrs:{ $LoadAttr:["isbn" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_20]}] } ] $INTERPRO_TEST_LOADER_reaction=$LoadClass:["INTERPRO_TEST_LOADER_reaction" libs:{$INTERPRO_TEST_DB} tin:"reaction" attrs:{ $LoadAttr:["reaction" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_21]}] } ] $INTERPRO_TEST_LOADER_rel_ref_PUBLICATIONS=$LoadClass:[ "INTERPRO_TEST_LOADER_rel_ref_PUBLICATIONS" libs:{$INTERPRO_TEST_DB} tin:"rel_ref" attrs:{ $LoadAttr:["rel_ref_ipr_ref_pub" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_22_1_PUBLICATIONS]}] # $LoadAttr:["rel_ref_type" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_22_2]}] } ] #$INTERPRO_TEST_LOADER_release=$LoadClass:["INTERPRO_TEST_LOADER_release" # libs:{$INTERPRO_TEST_DB} # tin:"release" # attrs:{ # $LoadAttr:["db_info" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_db_info]}] # } #] #$INTERPRO_TEST_LOADER_sec_ac=$LoadClass:["INTERPRO_TEST_LOADER_sec_ac" # libs:{$INTERPRO_TEST_DB} # tin:"sec_ac" # attrs:{ # $LoadAttr:["sec_ac_acc" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_23_1]}] # } #] #$INTERPRO_TEST_LOADER_sec_list=$LoadClass:["INTERPRO_TEST_LOADER_sec_list" # libs:{$INTERPRO_TEST_DB} # tin:"sec_list" # attrs:{ # $LoadAttr:["sec_ac" type:object card:multi # load:{$Tok:[loader:$INTERPRO_TEST_LOADER_sec_ac]}] # } #] $INTERPRO_TEST_LOADER_taxon=$LoadClass:["INTERPRO_TEST_LOADER_taxon" libs:{$INTERPRO_TEST_DB} tin:"taxon" attrs:{ $LoadAttr:["taxon" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_24]}] $LoadAttr:["taxon_tax_id" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_24_1]}] } ] $INTERPRO_TEST_LOADER_title=$LoadClass:["INTERPRO_TEST_LOADER_title" libs:{$INTERPRO_TEST_DB} tin:"title" attrs:{ $LoadAttr:["title" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_25]}] } ] #$INTERPRO_TEST_LOADER_type=$LoadClass:["INTERPRO_TEST_LOADER_type" # libs:{$INTERPRO_TEST_DB} # tin:"type" # attrs:{ # $LoadAttr:["type" type:string card:multi # load:{$Tok:[field:$DF_INTERPRO_TEST_26]}] # } #] $INTERPRO_TEST_LOADER_url=$LoadClass:["INTERPRO_TEST_LOADER_url" libs:{$INTERPRO_TEST_DB} tin:"url" attrs:{ $LoadAttr:["url" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_27]}] } ] $INTERPRO_TEST_LOADER_year=$LoadClass:["INTERPRO_TEST_LOADER_year" libs:{$INTERPRO_TEST_DB} tin:"year" attrs:{ $LoadAttr:["year" type:string card:multi load:{$Tok:[field:$DF_INTERPRO_TEST_28]}] } ] # # The XML "INTERPRO_TEST" databank format. # $INTERPRO_TEST_FORMAT=$LibFormat:[ fields:{ # The following field is required, so please do not remove it. # Also, modify the 'loadPath' if an ID different from the one # retrieved automatically by SRS is required, for example # within views. $Field:[$DF_ID index:id indexToken:xml loadPath:"interpro/@id"] # All the following fields are commented out for convenience. # Please uncomment the ones of interest. # $Field object added for demonstrating indexing from a single field # into multiple target fields using an indexField list. $Field:[$DF_INTERPRO_TEST_12_1 index:str indexToken:xml loadPath:"interpro/@id"] # The following $Field objects were added to demonstrate the # enhanced loadPath syntax. # $Field objects added for demonstrating special path syntax. $Field:[$DF_INTERPRO_TEST_ABSOLUTE_PATH index:str indexToken:xml loadPath:"/interpro/abstract/cite/@idref"] $Field:[$DF_INTERPRO_TEST_RELATIVE_PATH index:str indexToken:xml loadPath:"//cite/@idref"] $Field:[$DF_INTERPRO_TEST_ILLEGAL_PATH index:str indexToken:xml loadPath:"////interpro/abstract///cite//@idref"] $Field:[$DF_INTERPRO_TEST_SINGLE_ELEMENT_PATH index:str indexToken:xml loadPath:"cite/@idref"] # $Field objects added for demonstrating conditional indexing. $Field:[$DF_INTERPRO_TEST_12_3_Domain index:str indexToken:xml loadPath:"interpro/@short_name"] $Field:[$DF_INTERPRO_TEST_12_3_Family index:str indexToken:xml loadPath:"interpro/@short_name"] # $Field objects added for demonstrating loadPath list syntax. $Field:[$DF_INTERPRO_TEST_MIXED_LIST_1 index:str indexToken:xml loadPath:"interpro/abstract interpro/abstract/cite/@idref interpro/abstract/taxon interpro/abstract/taxon/@tax_id interpro/abstract/db_xref/@db interpro/abstract/db_xref/@dbkey interpro/abstract/reaction"] $Field:[$DF_INTERPRO_TEST_MIXED_LIST_2 index:str indexToken:xml loadPath:"interpro/abstract/* interpro/abstract/db_xref/@* interpro/abstract/taxon/@* interpro/abstract/cite/@* interpro/abstract"] # $Field objects added for demonstrating xsl:copy-of and xsl:value-of syntax. $Field:[$DF_INTERPRO_TEST_1_COPY_OF index:str indexToken:xml loadPath:"/interpro/abstract/xsl:copy-of"] $Field:[$DF_INTERPRO_TEST_1_VALUE_OF index:str indexToken:xml loadPath:"/interpro/abstract/xsl:value-of"] # "Regular" $Field objects contained in the INTERPRO master entry. $Field:[$DF_INTERPRO_TEST_1 index:str indexToken:xml loadPath:"interpro/abstract"] $Field:[$DF_INTERPRO_TEST_5_1 index:str indexToken:xml loadPath:"interpro/abstract/cite/@idref"] $Field:[$DF_INTERPRO_TEST_8_1 index:str indexToken:xml loadPath:"interpro/abstract/db_xref/@db"] $Field:[$DF_INTERPRO_TEST_8_3 index:str indexToken:xml loadPath:"interpro/abstract/db_xref/@dbkey"] $Field:[$DF_INTERPRO_TEST_11 index:str indexToken:xml loadPath:"example"] $Field:[$DF_INTERPRO_TEST_12_2 index:str indexToken:xml loadPath:"interpro/@type"] $Field:[$DF_INTERPRO_TEST_15 index:str indexToken:xml loadPath:"name"] $Field:[$DF_INTERPRO_TEST_21 index:str indexToken:xml loadPath:"reaction"] $Field:[$DF_INTERPRO_TEST_24 index:str indexToken:xml loadPath:"taxon"] $Field:[$DF_INTERPRO_TEST_24_1 index:str indexToken:xml loadPath:"taxon/@tax_id"] } fileType:{$INTERPRO_TEST_FILE} syntax:$XML_SYNTAX ] # $SrsField object added for demonstrating indexing from a single field # into multiple target fields using an indexField list. $DF_INTERPRO_TEST_12_1=$SrsField:["interpro_id" short:'idcp'] # $SrsField objects added for demonstrating special path syntax. $DF_INTERPRO_TEST_ABSOLUTE_PATH=$SrsField:["absolute_path" short:'abpth'] $DF_INTERPRO_TEST_RELATIVE_PATH=$SrsField:["relative_path" short:'relp'] $DF_INTERPRO_TEST_ILLEGAL_PATH=$SrsField:["illegal_path" short:'illp'] $DF_INTERPRO_TEST_SINGLE_ELEMENT_PATH=$SrsField:["single_element_path" short:'selp'] # $SrsField objects added for demonstrating conditional indexing. $DF_INTERPRO_TEST_12_3_Domain=$SrsField:["shortname_domain" short:'sndm'] $DF_INTERPRO_TEST_12_3_Family=$SrsField:["shortname_family" short:'snfm'] # $SrsField objects added for demonstrating loadPath list syntax. $DF_INTERPRO_TEST_MIXED_LIST_1=$SrsField:["mixed_list_1" short:'mls1'] $DF_INTERPRO_TEST_MIXED_LIST_2=$SrsField:["mixed_list_2" short:'mls2'] # $SrsField object added for demonstrating xsl:copy-of and xsl:value-of syntax. $DF_INTERPRO_TEST_1_COPY_OF=$SrsField:["copy_of_abstract" short:'abcop'] $DF_INTERPRO_TEST_1_VALUE_OF=$SrsField:["value_of_abstract" short:'abval'] # "Regular" $SrsField objects contained in the INTERPRO master entry. $DF_INTERPRO_TEST_1=$SrsField:["abstract" short:'abst'] $DF_INTERPRO_TEST_5_1=$SrsField:["cite_idref" short:'ctid'] $DF_INTERPRO_TEST_8_1=$SrsField:["db_xref_db" short:'xdb'] $DF_INTERPRO_TEST_8_3=$SrsField:["db_xref_dbkey" short:'xdbk'] $DF_INTERPRO_TEST_12_2=$SrsField:["interpro_type" short:'type'] $DF_INTERPRO_TEST_15=$SrsField:["name" short:'name'] $DF_INTERPRO_TEST_21=$SrsField:["reaction" short:'reac'] $DF_INTERPRO_TEST_24=$SrsField:["taxon" short:'txon'] $DF_INTERPRO_TEST_24_1=$SrsField:["taxon_tax_id" short:'txid'] # # The "INTERPRO_TEST_EXAMPLES" subentry format. # $INTERPRO_TEST_EXAMPLES_FORMAT=$LibFormat:[ syntax:$XML_SYNTAX tin:example idType:$Comment_Id fields:{ $Field:[$DF_ID inherits:y] # New db_xref fields were added to support separate indexing and # loading for the EXAMPLES and PUBLICATIONS subentry libraries. $Field:[$DF_INTERPRO_TEST_8_1_EXAMPLES index:str indexToken:xml loadPath:"example/db_xref/@db"] $Field:[$DF_INTERPRO_TEST_8_3_EXAMPLES index:str indexToken:xml loadPath:"example/db_xref/@dbkey"] # "Regular" $Field objects contained in the EXAMPLES subentry. $Field:[$DF_INTERPRO_TEST_11 index:str indexToken:xml loadPath:"example"] } ] # New db_xref fields were added to support separate indexing and # loading for the EXAMPLES and PUBLICATIONS subentry libraries. $DF_INTERPRO_TEST_8_1_EXAMPLES=$SrsField:["db_xref_db_exa" short:'xdbe'] $DF_INTERPRO_TEST_8_3_EXAMPLES=$SrsField:["db_xref_dbkey_exa" short:'xdke'] # "Regular" $SrsField objects contained in the EXAMPLES subentry. $DF_INTERPRO_TEST_11=$SrsField:["example" short:'exam'] # # The "INTERPRO_TEST_PUBLICATIONS" subentry format. # $INTERPRO_TEST_PUBLICATIONS_FORMAT=$LibFormat:[ syntax:$XML_SYNTAX tin:publication idType:$Reference_Id fields:{ $Field:[$DF_ID inherits:y] # The following $Field objects were added to demonstrate the # enhanced loadPath syntax. # $Field object added for demonstrating deprecated loadPath syntax. $Field:[$DF_INTERPRO_TEST_PUBLICATIONS_DEPRECATED_SYNTAX index:str indexToken:xml loadPath:"publication&id"] # $Field object added for demonstrating loadPath list syntax. $Field:[$DF_INTERPRO_TEST_PUBLICATIONS_ATTRIBUTE_LIST index:str indexToken:xml loadPath:"book_info/@english_language book_info/@availability"] # $Field objects added for demonstrating special loadPath target syntax ('@*' '*'). $Field:[$DF_INTERPRO_TEST_PUBLICATIONS_ALL_ATTRIBUTES index:str indexToken:xml loadPath:"book_info/@*"] $Field:[$DF_INTERPRO_TEST_PUBLICATIONS_ALL_CHILD_ELEMENTS index:str indexToken:xml loadPath:"book_info/*"] # $Field objects added for demonstrating xsl:copy-of and xsl:value-of syntax. $Field:[$DF_INTERPRO_TEST_PUBLICATIONS_COPY_OF index:str indexToken:xml loadPath:"book_info/xsl:copy-of"] $Field:[$DF_INTERPRO_TEST_PUBLICATIONS_VALUE_OF index:str indexToken:xml loadPath:"book_info/xsl:value-of"] # New abstract, cite, and db_xref fields were added to support separate indexing # and loading for the EXAMPLES and PUBLICATIONS subentry libraries. $Field:[$DF_INTERPRO_TEST_1_PUBLICATIONS index:str indexToken:xml loadPath:"publication/book_info/abstract"] $Field:[$DF_INTERPRO_TEST_5_1_PUBLICATIONS index:str indexToken:xml loadPath:"book_info/abstract/cite/@idref"] $Field:[$DF_INTERPRO_TEST_8_1_PUBLICATIONS index:str indexToken:xml loadPath:"publication/db_xref/@db"] $Field:[$DF_INTERPRO_TEST_8_3_PUBLICATIONS index:str indexToken:xml loadPath:"publication/db_xref/@dbkey"] # "Regular" $Field objects contained in the PUBLICATIONS subentry. $Field:[$DF_INTERPRO_TEST_2 index:str indexToken:xml loadPath:"author_list"] $Field:[$DF_INTERPRO_TEST_3 index:str indexToken:xml loadPath:"publication/book_title"] $Field:[$DF_INTERPRO_TEST_13 index:str indexToken:xml loadPath:"journal"] $Field:[$DF_INTERPRO_TEST_14_1 index:int indexToken:xml loadPath:"location/@firstpage"] $Field:[$DF_INTERPRO_TEST_14_2 index:int indexToken:xml loadPath:"location/@lastpage"] $Field:[$DF_INTERPRO_TEST_14_3 index:str indexToken:xml loadPath:"location/@volume"] $Field:[$DF_INTERPRO_TEST_14_4 index:str indexToken:xml loadPath:"location/@issue"] $Field:[$DF_INTERPRO_TEST_17_1 index:str indexToken:xml loadPath:"publication/@id"] $Field:[$DF_INTERPRO_TEST_18_1 index:str indexToken:xml loadPath:"publication/book_info/@english_language"] $Field:[$DF_INTERPRO_TEST_18_2 index:str indexToken:xml loadPath:"publication/book_info/@availability"] $Field:[$DF_INTERPRO_TEST_19 index:str indexToken:xml loadPath:"publisher"] $Field:[$DF_INTERPRO_TEST_20 index:str indexToken:xml loadPath:"isbn"] $Field:[$DF_INTERPRO_TEST_25 index:str indexToken:xml loadPath:"publication/title"] $Field:[$DF_INTERPRO_TEST_27 index:str indexToken:xml loadPath:"publication/url"] $Field:[$DF_INTERPRO_TEST_28 index:str indexToken:xml loadPath:"publication/year"] # $Field object added for demonstrating loading of sub-subentries. # The rel_ref field was only activated for the publications subentry library. $Field:[$DF_INTERPRO_TEST_22_1_PUBLICATIONS index:str indexToken:xml loadPath:"publication/child_list/rel_ref/@ipr_ref"] } ] # $SrsField object added for demonstrating deprecated loadPath syntax. $DF_INTERPRO_TEST_PUBLICATIONS_DEPRECATED_SYNTAX=$SrsField:[ "deprecated_syntax_pub" short:'depcp'] # $SrsField object added for demonstrating loadPath list syntax. $DF_INTERPRO_TEST_PUBLICATIONS_ATTRIBUTE_LIST=$SrsField:[ "attribute_list_pub" short:'alstp'] # $SrsField objects added for demonstrating special loadPath target syntax ('@*' '*'). $DF_INTERPRO_TEST_PUBLICATIONS_ALL_ATTRIBUTES=$SrsField:[ "all_attributes_pub" short:'alatp'] $DF_INTERPRO_TEST_PUBLICATIONS_ALL_CHILD_ELEMENTS=$SrsField:[ "all_child_elements_pub" short:'alelp'] # $SrsField objects added for demonstrating xsl:copy-of and xsl:value-of syntax. $DF_INTERPRO_TEST_PUBLICATIONS_COPY_OF=$SrsField:["copy-of_book_info" short:'bicop'] $DF_INTERPRO_TEST_PUBLICATIONS_VALUE_OF=$SrsField:["value-of_book_info" short:'bival'] # New abstract, cite, and db_xref fields were added to support separate indexing # and loading for the EXAMPLES and PUBLICATIONS subentry libraries. $DF_INTERPRO_TEST_1_PUBLICATIONS=$SrsField:["abstract_pub" short:'absp'] $DF_INTERPRO_TEST_5_1_PUBLICATIONS=$SrsField:["cite_idref_pub" short:'ctidp'] $DF_INTERPRO_TEST_8_1_PUBLICATIONS=$SrsField:["db_xref_db_pub" short:'xdbp'] $DF_INTERPRO_TEST_8_3_PUBLICATIONS=$SrsField:["db_xref_dbkey_pub" short:'xdkp'] # $SrsField object added for demonstrating loading of sub-subentries. # The rel_ref field was only activated for the publications subentry library. $DF_INTERPRO_TEST_22_1_PUBLICATIONS=$SrsField:["rel_ref_ipr_ref_pub" short:"relrefs"] # "Regular" $SrsField objects contained in the PUBLICATIONS subentry. $DF_INTERPRO_TEST_2=$SrsField:["author_list" short:'auth'] $DF_INTERPRO_TEST_3=$SrsField:["book_title" short:'bttl'] $DF_INTERPRO_TEST_13=$SrsField:["journal" short:'jrnl'] $DF_INTERPRO_TEST_14_1=$SrsField:["location_firstpage" short:'fpag'] $DF_INTERPRO_TEST_14_2=$SrsField:["location_lastpage" short:'lpag'] $DF_INTERPRO_TEST_14_3=$SrsField:["location_volume" short:'vol'] $DF_INTERPRO_TEST_14_4=$SrsField:["location_issue" short:'iss'] $DF_INTERPRO_TEST_17_1=$SrsField:["publication_id" short:'pbid'] $DF_INTERPRO_TEST_18_1=$SrsField:["book_info_english_language" short:'biel'] $DF_INTERPRO_TEST_18_2=$SrsField:["book_info_availability" short:'biav'] $DF_INTERPRO_TEST_19=$SrsField:["publisher" short:'publ'] $DF_INTERPRO_TEST_20=$SrsField:["isbn" short:'isbn'] $DF_INTERPRO_TEST_25=$SrsField:["title" short:'titl'] $DF_INTERPRO_TEST_27=$SrsField:["url" short:'url'] $DF_INTERPRO_TEST_28=$SrsField:["year" short:'year'] # "Leftover" $Field objects. # $Field:[$DF_INTERPRO_TEST_4 index:str indexToken:xml # loadPath:"category"] # $Field:[$DF_INTERPRO_TEST_6_1 index:str indexToken:xml # loadPath:"classification/@id"] # $Field:[$DF_INTERPRO_TEST_6_2 index:str indexToken:xml # loadPath:"classification/@class_type"] # $Field:[$DF_INTERPRO_TEST_7_1 index:str indexToken:xml # loadPath:"db_info/@name"] # $Field:[$DF_INTERPRO_TEST_7_2 index:str indexToken:xml # loadPath:"db_info/@version"] # $Field:[$DF_INTERPRO_TEST_7_3 index:str indexToken:xml # loadPath:"db_info/@file_date"] # $Field:[$DF_INTERPRO_TEST_7_4 index:str indexToken:xml # loadPath:"db_info/@entry_count"] # $Field:[$DF_INTERPRO_TEST_8_2 index:str indexToken:xml # loadPath:"db_xref/@version"] # $Field:[$DF_INTERPRO_TEST_8_4 index:str indexToken:xml # loadPath:"db_xref/@name"] # $Field:[$DF_INTERPRO_TEST_9_1 index:str indexToken:xml # loadPath:"del_ref/@id"] # $Field:[$DF_INTERPRO_TEST_10 index:str indexToken:xml # loadPath:"description"] # $Field:[$DF_INTERPRO_TEST_12_3 index:str indexToken:xml # loadPath:"interpro/@short_name"] # $Field:[$DF_INTERPRO_TEST_16_1 index:str indexToken:xml # loadPath:"protein/@id"] # $Field:[$DF_INTERPRO_TEST_22_2 index:str indexToken:xml # loadPath:"rel_ref/@type"] # $Field:[$DF_INTERPRO_TEST_23_1 index:str indexToken:xml # loadPath:"sec_ac/@acc"] # $Field:[$DF_INTERPRO_TEST_26 index:str indexToken:xml # loadPath:"type"] # "Leftover" $SrsField objects. #$DF_INTERPRO_TEST_4=$SrsField:["category" short:'????'] #$DF_INTERPRO_TEST_6_1=$SrsField:["classification_id" short:'????'] #$DF_INTERPRO_TEST_6_2=$SrsField:["classification_class_type" short:'????'] #$DF_INTERPRO_TEST_7_1=$SrsField:["db_info_name" short:'????'] #$DF_INTERPRO_TEST_7_2=$SrsField:["db_info_version" short:'????'] #$DF_INTERPRO_TEST_7_3=$SrsField:["db_info_file_date" short:'????'] #$DF_INTERPRO_TEST_7_4=$SrsField:["db_info_entry_count" short:'????'] #$DF_INTERPRO_TEST_8_2=$SrsField:["db_xref_version" short:'????'] #$DF_INTERPRO_TEST_8_4=$SrsField:["db_xref_name" short:'????'] #$DF_INTERPRO_TEST_9_1=$SrsField:["del_ref_id" short:'????'] #$DF_INTERPRO_TEST_10=$SrsField:["description" short:'????'] #$DF_INTERPRO_TEST_12_3=$SrsField:["interpro_short_name" short:'????'] #$DF_INTERPRO_TEST_16_1=$SrsField:["protein_id" short:'????'] #$DF_INTERPRO_TEST_22_2=$SrsField:["rel_ref_type" short:'????'] #$DF_INTERPRO_TEST_23_1=$SrsField:["sec_ac_acc" short:'????'] #$DF_INTERPRO_TEST_26=$SrsField:["type" short:'????'] # # The XML "INTERPRO_TEST" databank file descriptor. # $INTERPRO_TEST_FILE=$FileType:[xml typeName:xml maxline:1024 fieldTokens:entry fipVar:entryFip ] # # $Syntax object used for micro-parsing and conditional indexing. # $INTERPRO_TEST_SYNTAX=$Syntax:[file:"($Env:SRSDEMO)/interpro_test.is"] # # The index metaphors used to index the data of the XML "INTERPRO_TEST" # databank. # # NOTES: # 1. Generated automatically by the DTD-to-Icarus translator. # 2. When modified, invoke the "srssection" command to commit # the modifications into the SRS system. # 3. If missing, remember to add the "indexField:$DF_ID" # specification within the index metaphor for the element # or attribute carrying the XML "INTERPRO_TEST" # databank entry ID. # # The original OIM for abstract, used to index the abstract element # belonging to the main interpro_test library. $OIM_INTERPRO_TEST_1=$ObjIndexMetaphor:[className:"abstract" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_1 path:'interpro' split:"[ \n\t]+" ] # A new OIM for abstract was added to index the abstract element # belonging to the PUBLICATIONS subentry library. $OIM_INTERPRO_TEST_1_PUBLICATIONS=$ObjIndexMetaphor:[className:"abstract" nameSpace:$INTERPRO_TEST_DB indexField:{ $DF_INTERPRO_TEST_1_PUBLICATIONS $DF_INTERPRO_TEST_PUBLICATIONS_ALL_CHILD_ELEMENTS} ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB path:'interpro/*/publication/book_info' split:"[ \n\t]+" ] $OIM_INTERPRO_TEST_2=$ObjIndexMetaphor:[className:"author_list" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_2 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB split:"[,]+" ] $OIM_INTERPRO_TEST_3=$ObjIndexMetaphor:[className:"book_title" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_3 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] #$OIM_INTERPRO_TEST_4=$ObjIndexMetaphor:[className:"category" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_4 #] # The original OIM for cite, used to index the cite/@idref attribute # belonging to the main interpro_test library. $OIM_INTERPRO_TEST_5=$ObjIndexMetaphor:[className:"cite" nameSpace:$INTERPRO_TEST_DB path:'interpro/abstract' attrMetaphors:{ $AttrIndexMetaphor:[attrName:"idref" indexField:$DF_INTERPRO_TEST_5_1 ] } ] # A new OIM for cite was added to index the the cite/@idref attribute # belonging to the PUBLICATIONS subentry library. $OIM_INTERPRO_TEST_5_PUBLICATIONS=$ObjIndexMetaphor:[className:"cite" nameSpace:$INTERPRO_TEST_DB path:'book_info/abstract' attrMetaphors:{ $AttrIndexMetaphor:[attrName:"idref" indexField:$DF_INTERPRO_TEST_5_1_PUBLICATIONS ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] } ] #$OIM_INTERPRO_TEST_6=$ObjIndexMetaphor:[className:"classification" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"id" # indexField:$DF_INTERPRO_TEST_6_1 # ] # $AttrIndexMetaphor:[attrName:"class_type" # indexField:$DF_INTERPRO_TEST_6_2 # ] # } #] #$OIM_INTERPRO_TEST_7=$ObjIndexMetaphor:[className:"db_info" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"name" # indexField:$DF_INTERPRO_TEST_7_1 # ] # $AttrIndexMetaphor:[attrName:"version" # indexField:$DF_INTERPRO_TEST_7_2 # ] # $AttrIndexMetaphor:[attrName:"file_date" # indexField:$DF_INTERPRO_TEST_7_3 # ] # $AttrIndexMetaphor:[attrName:"entry_count" # indexField:$DF_INTERPRO_TEST_7_4 # ] # } #] # The original OIM for db_xref, used to index the db_xref attributes # belonging to the main interpro_test library. $OIM_INTERPRO_TEST_8=$ObjIndexMetaphor:[className:"db_xref" nameSpace:$INTERPRO_TEST_DB path:'interpro/abstract' attrMetaphors:{ $AttrIndexMetaphor:[attrName:"db" indexField:$DF_INTERPRO_TEST_8_1 ] # $AttrIndexMetaphor:[attrName:"version" # indexField:$DF_INTERPRO_TEST_8_2 # ] $AttrIndexMetaphor:[attrName:"dbkey" indexField:$DF_INTERPRO_TEST_8_3 ] # $AttrIndexMetaphor:[attrName:"name" # indexField:$DF_INTERPRO_TEST_8_4 # ] } ] # A new OIM for db_xref was added to index the db_xref attributes # belonging to the PUBLICATIONS subentry library. $OIM_INTERPRO_TEST_8_PUBLICATIONS=$ObjIndexMetaphor:[className:"db_xref" nameSpace:$INTERPRO_TEST_DB path:'publication' attrMetaphors:{ $AttrIndexMetaphor:[attrName:"db" indexField:$DF_INTERPRO_TEST_8_1_PUBLICATIONS ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] $AttrIndexMetaphor:[attrName:"dbkey" indexField:$DF_INTERPRO_TEST_8_3_PUBLICATIONS ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] } ] # A new OIM for db_xref was added to index the db_xref attributes # belonging to the EXAMPLES subentry library. $OIM_INTERPRO_TEST_8_EXAMPLES=$ObjIndexMetaphor:[className:"db_xref" nameSpace:$INTERPRO_TEST_DB path:'interpro&example_list&example' attrMetaphors:{ $AttrIndexMetaphor:[attrName:"db" indexField:$DF_INTERPRO_TEST_8_1_EXAMPLES ofSubentry:$INTERPRO_TEST_EXAMPLES_DB ] $AttrIndexMetaphor:[attrName:"dbkey" indexField:$DF_INTERPRO_TEST_8_3_EXAMPLES ofSubentry:$INTERPRO_TEST_EXAMPLES_DB ] } ] #$OIM_INTERPRO_TEST_9=$ObjIndexMetaphor:[className:"del_ref" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"id" # indexField:$DF_INTERPRO_TEST_9_1 # ] # } #] #$OIM_INTERPRO_TEST_10=$ObjIndexMetaphor:[className:"description" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_10 #] $OIM_INTERPRO_TEST_11=$ObjIndexMetaphor:[className:"example" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_11 subentry:$INTERPRO_TEST_EXAMPLES_DB ] $OIM_INTERPRO_TEST_12=$ObjIndexMetaphor:[className:"interpro" nameSpace:$INTERPRO_TEST_DB syntax:$INTERPRO_TEST_SYNTAX attrMetaphors:{ # The following $AIM object was modified to demonstrate # micro-parsing of the interpro/@id attribute. $AttrIndexMetaphor:[attrName:"id" indexField:{$DF_ID $DF_INTERPRO_TEST_12_1} token:stripColon ] $AttrIndexMetaphor:[attrName:"type" indexField:$DF_INTERPRO_TEST_12_2 ] # The following $AIM object was modified to demonstrate # conditional indexing of the interpro/@short_name attribute. # If interpro/@type is 'Domain', index short_name into # $DF_INTERPRO_TEST_12_3_Domain. If interpro/@type is 'Family', # index short_name into $DF_INTERPRO_TEST_12_3_Family. $AttrIndexMetaphor:[attrName:"short_name" indexField:{$DF_INTERPRO_TEST_12_3_Domain $DF_INTERPRO_TEST_12_3_Family} conditionField:$DF_INTERPRO_TEST_12_2 conditionToken:evaluateType ] } ] $OIM_INTERPRO_TEST_13=$ObjIndexMetaphor:[className:"journal" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_13 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] $OIM_INTERPRO_TEST_14=$ObjIndexMetaphor:[className:"location" nameSpace:$INTERPRO_TEST_DB attrMetaphors:{ $AttrIndexMetaphor:[attrName:"firstpage" indexField:$DF_INTERPRO_TEST_14_1 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] $AttrIndexMetaphor:[attrName:"lastpage" indexField:$DF_INTERPRO_TEST_14_2 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] $AttrIndexMetaphor:[attrName:"volume" indexField:$DF_INTERPRO_TEST_14_3 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] $AttrIndexMetaphor:[attrName:"issue" indexField:$DF_INTERPRO_TEST_14_4 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] } ] $OIM_INTERPRO_TEST_15=$ObjIndexMetaphor:[className:"name" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_15 ] #$OIM_INTERPRO_TEST_16=$ObjIndexMetaphor:[className:"protein" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"id" # indexField:$DF_INTERPRO_TEST_16_1 # ] # } #] $OIM_INTERPRO_TEST_17=$ObjIndexMetaphor:[className:"publication" nameSpace:$INTERPRO_TEST_DB subentry:$INTERPRO_TEST_PUBLICATIONS_DB attrMetaphors:{ $AttrIndexMetaphor:[attrName:"id" indexField:$DF_INTERPRO_TEST_17_1 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] } ] $OIM_INTERPRO_TEST_18=$ObjIndexMetaphor:[className:"book_info" nameSpace:$INTERPRO_TEST_DB attrMetaphors:{ $AttrIndexMetaphor:[attrName:"english_language" indexField:$DF_INTERPRO_TEST_18_1 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] $AttrIndexMetaphor:[attrName:"availability" indexField:$DF_INTERPRO_TEST_18_2 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] } ] $OIM_INTERPRO_TEST_19=$ObjIndexMetaphor:[className:"publisher" nameSpace:$INTERPRO_TEST_DB indexField:{$DF_INTERPRO_TEST_19 $DF_INTERPRO_TEST_PUBLICATIONS_ALL_CHILD_ELEMENTS} ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] $OIM_INTERPRO_TEST_20=$ObjIndexMetaphor:[className:"isbn" nameSpace:$INTERPRO_TEST_DB indexField:{$DF_INTERPRO_TEST_20 $DF_INTERPRO_TEST_PUBLICATIONS_ALL_CHILD_ELEMENTS} ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] $OIM_INTERPRO_TEST_21=$ObjIndexMetaphor:[className:"reaction" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_21 ] $OIM_INTERPRO_TEST_22=$ObjIndexMetaphor:[className:"rel_ref" nameSpace:$INTERPRO_TEST_DB attrMetaphors:{ $AttrIndexMetaphor:[attrName:"ipr_ref" indexField:$DF_INTERPRO_TEST_22_1_PUBLICATIONS ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] # $AttrIndexMetaphor:[attrName:"type" # indexField:$DF_INTERPRO_TEST_22_2 # ] } ] #$OIM_INTERPRO_TEST_23=$ObjIndexMetaphor:[className:"sec_ac" # nameSpace:$INTERPRO_TEST_DB # attrMetaphors:{ # $AttrIndexMetaphor:[attrName:"acc" # indexField:$DF_INTERPRO_TEST_23_1 # ] # } #] $OIM_INTERPRO_TEST_24=$ObjIndexMetaphor:[className:"taxon" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_24 attrMetaphors:{ $AttrIndexMetaphor:[attrName:"tax_id" indexField:$DF_INTERPRO_TEST_24_1 ] } ] $OIM_INTERPRO_TEST_25=$ObjIndexMetaphor:[className:"title" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_25 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] #$OIM_INTERPRO_TEST_26=$ObjIndexMetaphor:[className:"type" # nameSpace:$INTERPRO_TEST_DB # indexField:$DF_INTERPRO_TEST_26 #] $OIM_INTERPRO_TEST_27=$ObjIndexMetaphor:[className:"url" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_27 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] $OIM_INTERPRO_TEST_28=$ObjIndexMetaphor:[className:"year" nameSpace:$INTERPRO_TEST_DB indexField:$DF_INTERPRO_TEST_28 ofSubentry:$INTERPRO_TEST_PUBLICATIONS_DB ] # # The XML "INTERPRO_TEST" databank default attribute values. DO NOT TOUCH! # $INTERPRO_TEST_AllAttributeValues={ 'cite':{ 'idref':'' } 'classification':{ 'id':'' 'class_type':'' } 'db_info':{ 'name':'' 'version':'' 'file_date':'' 'entry_count':'' } 'db_xref':{ 'db':'' 'version':'' 'dbkey':'' 'name':'' } 'del_ref':{ 'id':'' } 'interpro':{ 'id':'' 'type':'' 'short_name':'' } 'location':{ 'firstpage':'' 'lastpage':'' 'volume':'' 'issue':'' } 'protein':{ 'id':'' } 'publication':{ 'id':'' } 'book_info':{ 'english_language':'yes' 'availability':'publisher' } 'rel_ref':{ 'ipr_ref':'' 'type':'' } 'sec_ac':{ 'acc':'' } 'taxon':{ 'tax_id':'' } } # # The XML "INTERPRO_TEST" databank general parsed entities. DO NOT TOUCH! # $INTERPRO_TEST_GeneralParsedEntities={ 'pub':'publisher' 'ol':'on-line' 'dlib':'domestic_library' 'flib':'foreign_library' 'oop':'out_of_print' 'ea':'et al.' } # # The XML "INTERPRO_TEST" databank child element list. DO NOT TOUCH! # $INTERPRO_TEST_ChildElementList={ 'abstract':{ 'cite':'' 'taxon':'' 'db_xref':'' 'reaction':'' } 'author_list':{} 'book_title':{} 'category':{} 'child_list':{ 'rel_ref':'' } 'cite':{} 'class_list':{ 'classification':'' } 'classification':{ 'category':'' 'description':'' } 'contains':{ 'rel_ref':'' } 'db_info':{} 'db_xref':{} 'del_ref':{ 'description':'' } 'deleted_entries':{ 'del_ref':'' } 'description':{} 'example':{ 'cite':'' 'db_xref':'' } 'example_list':{ 'example':'' } 'external_doc_list':{ 'db_xref':'' } 'found_in':{ 'rel_ref':'' } 'interpro':{ 'name':'' 'sec_list':'' 'abstract':'' 'class_list':'' 'example_list':'' 'pub_list':'' 'contains':'' 'external_doc_list':'' 'member_list':'' 'parent_list':'' 'child_list':'' 'found_in':'' } 'interprodb':{ 'release':'' 'interpro':'' } 'journal':{} 'location':{} 'member_list':{ 'db_xref':'' } 'name':{} 'parent_list':{ 'rel_ref':'' } 'protein':{} 'pub_list':{ 'publication':'' } 'publication':{ 'author_list':'' 'title':'' 'db_xref':'' 'journal':'' 'book_title':'' 'book_info':'' 'location':'' 'year':'' 'url':'' } 'book_info':{ 'abstract':'' 'publisher':'' 'isbn':'' } 'publisher':{} 'isbn':{} 'reaction':{} 'rel_ref':{} 'release':{ 'db_info':'' } 'sec_ac':{} 'sec_list':{ 'sec_ac':'' } 'taxon':{} 'title':{} 'type':{} 'url':{} 'year':{} }

# # The XML Printing Metaphor for the XML "GAME2" library. # # NOTES: # 1. The XML printing metaphors are generated automatically by the # dtd2ica utility when the '-printer' command line option is used. # a) For a library with an internal DTD subset, use # dtd2ica .xml -lib -printer # b) For a library with no internal DTD subset, use # dtd2ica -dtd .dtd -lib -printer # c) The file containing the XML printing metaphors will be called # _printer.i, and will be saved in the $SRSSITE directory. # 2. The _printer.i file must be edited to create associations # between $LoadAttr objects in the source loader and XML elements # and attributes in the target XML format. # a) Add a 'sourceLoader' attribute to the top-level XMLPrintMetaphor # object (i.e. the print metaphor for the entry-delimiting element). # The value of the 'sourceLoader' attribute should be the name of # the main loader for the source library from which data is being # loaded, e.g. sourceLoader:$EmblEntry_Class. # b) Add an 'id' attribute to the top-level XMLPrintMetaphor object. # The value of this attribute should match the value of the # 'xmlPrintMetaphor' attribute of the ToXml command which is used # to invoke the printing metaphors (see the sample script in # point 5 below), e.g. id:"". # c) Uncomment the $XMLPrintAttr objects for the XML attributes that # will appear in the output, and the 'from...$XMLPrintContent' # objects for the XML elements that will appear in the output. # d) In each uncommented $XMLPrintContent object, replace the four # question marks ("????") which appear as the value of the unnamed # attribute with the name of the $LoadAttr object in the source # data loader from which the data should be retrieved. Also # replace the four question marks in the 'sourceLoader' attribute # with the name of the main loader for the source library, e.g. # sourceLoader:$EmblEntry_Class. # 3. Edit the $SRSSITE/srsdb.i file to integrate the XML printing # metaphors into your SRS installation by adding the following line: # file:"SRSSITE:_printer.i" # 4. Invoke the "srssection" command to make the "GAME2" XML printing # metaphors available to the SRS system. # 5. To use the XML printing metaphors to print data from any type of # library (flat file, RDB, or other XML format) in the "GAME2" # XML format, use an Icarus script that # a) queries the source library and returns a set of entries, # b) iterates over the entry set and, # c) invokes the printing metaphors using the Icarus ToXml command. # d) Sample Icarus script: # $s=$Session:[] # $set=$s.query:'embl' # $Print:| # |<LoadedSet> # foreach:[$entry in:$set] { # $obj = $entry.load:Embl_Entry # $Print:$ToXml:[$obj xmlPrintMetaphor:] # } # $Print:"</LoadedSet>" # $GAME2_PRINTER_name = $XMLPrintMetaphor:["name" from:{ $XMLPrintContent:[objattrname:"CC" sourceLoader:$EmblEntry_Class] $XMLPrintContent:[objattrname:"Source" sourceLoader:$GenbankEntry_Class] } ] $GAME2_PRINTER_description = $XMLPrintMetaphor:["description" from:{ $XMLPrintContent:[objattrname:"Des" sourceLoader:$EmblEntry_Class] $XMLPrintContent:[objattrname:"Des" sourceLoader:$GenbankEntry_Class] } ] $GAME2_PRINTER_type = $XMLPrintMetaphor:["type" attributes:{ # $XMLPrintAttr:["rdf:resource" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } ] $GAME2_PRINTER_seq_link = $XMLPrintMetaphor:["seq_link" children:{ $GAME2_PRINTER_link } ] $GAME2_PRINTER_version = $XMLPrintMetaphor:["version" from:{ $XMLPrintContent:[objattrname:"SeqV" sourceLoader:$EmblEntry_Class] $XMLPrintContent:[objattrname:"SeqV" sourceLoader:$GenbankEntry_Class] } ] $GAME2_PRINTER_ref_link = $XMLPrintMetaphor:["ref_link" attributes:{ # $XMLPrintAttr:["xmlns" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:about" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["ref" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["element_name" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } ] $GAME2_PRINTER_dbxref = $XMLPrintMetaphor:["dbxref" children:{ $GAME2_PRINTER_xref_db $GAME2_PRINTER_xref_acc } attributes:{ # $XMLPrintAttr:["xmlns" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:about" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } ] $GAME2_PRINTER_relationship = $XMLPrintMetaphor:["relationship" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } ] $GAME2_PRINTER_xref_db = $XMLPrintMetaphor:["xref_db" from:{ $XMLPrintContent:[objattrname:"links/db" sourceLoader:$EmblEntry_Class] } ] $GAME2_PRINTER_xref_acc = $XMLPrintMetaphor:["xref_acc" attributes:{ # $XMLPrintAttr:["field" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } from:{ $XMLPrintContent:[objattrname:"Acc" sourceLoader:$EmblEntry_Class] $XMLPrintContent:[objattrname:"Acc" sourceLoader:$GenbankEntry_Class] } ] $GAME2_PRINTER_simple_xlink = $XMLPrintMetaphor:["simple_xlink" attributes:{ # $XMLPrintAttr:["xmlns" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:about" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["xlink:type" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["xlink:href" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["xlink:role" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["xlink:title" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["xlink:show" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["xlink:actuate" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } ] $GAME2_PRINTER_rdf_link = $XMLPrintMetaphor:["rdf_link" attributes:{ # $XMLPrintAttr:["xmlns" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:about" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:resource" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } ] $GAME2_PRINTER_span = $XMLPrintMetaphor:["span" children:{ $GAME2_PRINTER_start $GAME2_PRINTER_end } attributes:{ # $XMLPrintAttr:["between" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["either_dir" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } ] $GAME2_PRINTER_start = $XMLPrintMetaphor:["start" from:{ $XMLPrintContent:[objattrname:"features/begin" sourceLoader:$EmblEntry_Class] $XMLPrintContent:[objattrname:"features/begin" sourceLoader:$GenbankEntry_Class] } ] $GAME2_PRINTER_end = $XMLPrintMetaphor:["end" from:{ $XMLPrintContent:[objattrname:"features/end" sourceLoader:$EmblEntry_Class] $XMLPrintContent:[objattrname:"features/end" sourceLoader:$GenbankEntry_Class] } ] $GAME2_PRINTER_alignment = $XMLPrintMetaphor:["alignment" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } ] $GAME2_PRINTER_creation_date = $XMLPrintMetaphor:["creation_date" from:{ $XMLPrintContent:[objattrname:"CDate" sourceLoader:$EmblEntry_Class] $XMLPrintContent:[objattrname:"Date" sourceLoader:$GenbankEntry_Class] } ] $GAME2_PRINTER_residues = $XMLPrintMetaphor:["residues" from:{ $XMLPrintContent:[objattrname:"seq/seq" sourceLoader:$EmblEntry_Class] $XMLPrintContent:[objattrname:"seq/seq" sourceLoader:$GenbankEntry_Class] } ] $GAME2_PRINTER_result_set = $XMLPrintMetaphor:["result_set" children:{ $GAME2_PRINTER_type $GAME2_PRINTER_creation_date $GAME2_PRINTER_description $GAME2_PRINTER_link # The following $XMLPrintMetaphor object was not generated due # to an error in the GAME2 DTD, so it has been commented out. # $GAME2_PRINTER_feat $GAME2_PRINTER_result_span } ] $GAME2_PRINTER_result_span = $XMLPrintMetaphor:["result_span" children:{ $GAME2_PRINTER_score $GAME2_PRINTER_type $GAME2_PRINTER_description $GAME2_PRINTER_link $GAME2_PRINTER_seq_relationship } ] $GAME2_PRINTER_score = $XMLPrintMetaphor:["score" attributes:{ # $XMLPrintAttr:["score_type" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } ] $GAME2_PRINTER_program = $XMLPrintMetaphor:["program" children:{ $GAME2_PRINTER_program_name $GAME2_PRINTER_version $GAME2_PRINTER_parameter } attributes:{ # $XMLPrintAttr:["xmlns" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:about" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:resource" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } ] $GAME2_PRINTER_program_name = $XMLPrintMetaphor:["program_name" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } ] $GAME2_PRINTER_parameter = $XMLPrintMetaphor:["parameter" attributes:{ # $XMLPrintAttr:["param_type" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } ] $GAME2_PRINTER_database = $XMLPrintMetaphor:["database" attributes:{ # $XMLPrintAttr:["rdf:resource" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } ] $GAME2_PRINTER_feature_set = $XMLPrintMetaphor:["feature_set" children:{ $GAME2_PRINTER_name $GAME2_PRINTER_author $GAME2_PRINTER_version $GAME2_PRINTER_evidence $GAME2_PRINTER_produces_seq $GAME2_PRINTER_type $GAME2_PRINTER_creation_date $GAME2_PRINTER_description $GAME2_PRINTER_link # The following $XMLPrintMetaphor object was not generated due # to an error in the GAME2 DTD, so it has been commented out. # $GAME2_PRINTER_feat $GAME2_PRINTER_feature_span } ] $GAME2_PRINTER_feature_span = $XMLPrintMetaphor:["feature_span" children:{ $GAME2_PRINTER_name $GAME2_PRINTER_type $GAME2_PRINTER_description $GAME2_PRINTER_link $GAME2_PRINTER_seq_relationship $GAME2_PRINTER_evidence # The following $XMLPrintMetaphor object was not generated due # to an error in the GAME2 DTD, so it has been commented out. # $GAME2_PRINTER_tag_residues } ] $GAME2_PRINTER_produces_seq = $XMLPrintMetaphor:["produces_seq" children:{ # The following $XMLPrintMetaphor object was not generated due # to an error in the GAME2 DTD, so it has been commented out. # $GAME2_PRINTER_seq_seq $GAME2_PRINTER_link } ] $GAME2_PRINTER_author = $XMLPrintMetaphor:["author" attributes:{ # $XMLPrintAttr:["rdf:resource" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["email" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } from:{ $XMLPrintContent:[objattrname:"references/authors" sourceLoader:$EmblEntry_Class] $XMLPrintContent:[objattrname:"references/authors" sourceLoader:$GenbankEntry_Class] } ] $GAME2_PRINTER_evidence = $XMLPrintMetaphor:["evidence" children:{ $GAME2_PRINTER_link } attributes:{ # $XMLPrintAttr:["type" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } ] $GAME2_PRINTER_game = $XMLPrintMetaphor:["game" id:"game" sourceLoader:{$GenbankEntry_Class $EmblEntry_Class} children:{ $GAME2_PRINTER_seq $GAME2_PRINTER_annotation $GAME2_PRINTER_computational_analysis } ] $GAME2_PRINTER_annotation = $XMLPrintMetaphor:["annotation" children:{ $GAME2_PRINTER_name $GAME2_PRINTER_type $GAME2_PRINTER_description $GAME2_PRINTER_seq_link $GAME2_PRINTER_link $GAME2_PRINTER_feature_set } attributes:{ # $XMLPrintAttr:["xmlns" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:about" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["id" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } ] $GAME2_PRINTER_computational_analysis = $XMLPrintMetaphor:["computational_analysis" children:{ $GAME2_PRINTER_type $GAME2_PRINTER_description $GAME2_PRINTER_database $GAME2_PRINTER_program $GAME2_PRINTER_creation_date $GAME2_PRINTER_seq_link $GAME2_PRINTER_link $GAME2_PRINTER_result_set } attributes:{ # $XMLPrintAttr:["xmlns" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:about" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["id" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["seq" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } ] $GAME2_PRINTER_seq = $XMLPrintMetaphor:["seq" children:{ $GAME2_PRINTER_name $GAME2_PRINTER_link $GAME2_PRINTER_seq_relationship $GAME2_PRINTER_residues } attributes:{ # $XMLPrintAttr:["xmlns" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:about" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] $XMLPrintAttr:["id" from:{ $XMLPrintContent:[objattrname:"Key" sourceLoader:$EmblEntry_Class] $XMLPrintContent:[objattrname:"Key" sourceLoader:$GenbankEntry_Class] } ] $XMLPrintAttr:["length" from:{ $XMLPrintContent:[objattrname:"seqLen" sourceLoader:$EmblEntry_Class] $XMLPrintContent:[objattrname:"seqLen" sourceLoader:$GenbankEntry_Class] } ] # $XMLPrintAttr:["type" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } ] $GAME2_PRINTER_seq_relationship = $XMLPrintMetaphor:["seq_relationship" children:{ $GAME2_PRINTER_link $GAME2_PRINTER_span $GAME2_PRINTER_alignment } attributes:{ # $XMLPrintAttr:["xmlns" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:about" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["type" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } ] $GAME2_PRINTER_link = $XMLPrintMetaphor:["link" children:{ $GAME2_PRINTER_ref_link $GAME2_PRINTER_dbxref $GAME2_PRINTER_simple_xlink $GAME2_PRINTER_rdf_link } attributes:{ # $XMLPrintAttr:["xmlns" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] # $XMLPrintAttr:["rdf:about" # from:{ # $XMLPrintContent:[objattrname:"????" sourceLoader:????] # } # ] } ]