BITS Meetings' Virtual Library:
Abstracts from Italian Bioinformatics Meetings from 1999 to 2013


766 abstracts overall from 11 distinct proceedings





Display Abstracts | Brief :: Order by Meeting | First Author Name
1. Abbondante S, Nitsch R, Di Dato V, Di Gennaro A, Di Lauro R, Zannini S
A conserved thyroid-specific enhancer in the human and mouse Pax8 locus.
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
2. Ala U, Provero P, Piro R, Damasco C, Grassi E, Di Cunto F
Generation and analysis of a human-mouse conserved co-expression network
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
3. Altobelli G, Caselle M, De Bortoli M
Identifying networks of estrogen-responsive genes in breast cancer cells
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
4. Angelini C, Cutillo L, De Canditiis D, Mutarelli M, Pensky M
BATS: A user friendly Software for analyzing time series microarray experiments.
Meeting: BITS 2007 - Year: 2007
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Topic: Large scale analysis of experimental data
5. Attimonelli M, Lascaro D, Castellana S
Human NumtS: features and bioinformatics approaches for their location and quantification
Meeting: BITS 2007 - Year: 2007
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Topic: Molecular evolution and biodiversity
6. Attimonelli M, Rubino F, Voukelatu A, De Luca F, De Giorgi C
PPNEMA: a database of the RNA cistron from Plant Parasitic nematodes.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
7. Ausiello G, Gatti E, Gherardini PF, Via A, Helmer-Citterich M
An exhaustive analysis of analogies in protein binding sites of known structure
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
8. Ausiello G, Gherardini PF, Via A, Helmer-Citterich M
FunClust: Identification of functional motifs in non homologous proteins using multiple local structure comparison.
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
9. Autore F, Pagano B, Rittinger K, Fraternali F
In silico Phosphorylation of the SuperSH3 domain of p47phox
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
10. Bansal M, Belcastro V, Ambesi-Impiombato A, Di Bernardo D
Gene network reverse engineering: comparison of algorithms
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
11. Bartocci E, Corradini F, Entcheva E, Grosu R, Smolka SA
CellExcite: A tool for simulating in-silico Excitable Cells
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
12. Berisio R, Ruggiero A, Pedone C, Vitagliano L
Insight into pilus and non-pilus biogenesis from molecular dynamics studies
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
13. Bersani AM, Bersani E, Pedersen MG
Oscillations and bistability in intracellular signal transduction pathways
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
14. Boccia A, Elce A, Tomaiuolo R, Castaldo G, Paolella G
CST analysis in the characterization of cystic fibrosis patients
Meeting: BITS 2007 - Year: 2007
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Topic: Biomedical informatics
15. Bordo D, Demartini P, Polacco M
Identification of conserved sites in protein folds
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
16. Bosotti R, Ukmar G, Calogero RA, Isacchi A
Gene Expression database as a tool to identify potentially interesting Oncological Targets
Meeting: BITS 2007 - Year: 2007
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Topic: Biomedical informatics
17. Brick K, Pizzi E
Construction and analysis of compositionally biased substitution matrices for alignment of Plasmodium spp. proteins
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
18. Brilli M, Fani R, Liò P
Correlation between structural properties of promoters and physico-chemical features of Transcription Factors
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
19. Brilli M, Fani R, Liò P
Identifying Communities structure in paralogous genes
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
20. Brilli M, Liò P, Fondi M, Fani R
Histidine biosynthesis: a paradigm for the study of the origin and
Meeting: BITS 2007 - Year: 2007
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Topic: Molecular evolution and biodiversity
21. Buonaguro L, Aricò E, Wang E, Tornesello M, Tagliamonte M, Lewis GK, Marincola FM, Buonaguro FM
Gene expression profile of Immature monocyte-derived dendritic cells in response to HIV-1 Virus-Like Particles stimulation.
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
22. Calabrese A, Ammaturo L, Mele F, Talamo O, Tino A, Tortiglione C
From Gene Ontology to Cell Ontology: interoperability among biological knowledge bases
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
23. Calogero RA, Sanges R, Cordero F
oneChannelGUI: A Bioconductor graphical interface for single channel microarrays analysis.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
24. Calvanese L, Falcigno L, Oliva R, D'Auria G, Vacatello M, Paolillo L, Marasco D, Ruvo M
Structural Insights on the oncoprotein Cripto CFC domain and its Alk4 receptor
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
25. Cannata N, Angeletti M, Baldoncini A, Corradini F, Culmone R, Forcato C, Mattioni M, Merelli E
Spatial behavioral modeling and simulation of metabolic pathways with Orion
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
26. Cannataro M, Guzzi PH, Veltri P
A Framework for the Prediction of Protein Complexes
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
27. Cantarella C, Sepe L, Paolella G
IPROC, a remote web application for analysis and processing of multidimensional biological images
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
28. Capasso P, D'Acierno A, Picariello A
BioInView: a Tool for Integration and Visualization of Heterogeneous Bioinformatics Data Sources
Meeting: BITS 2007 - Year: 2007
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Topic: Biomedical informatics
29. Capriotti E, Fariselli P, Rossi I, Casadio R
The effect of mutations on protein stability changes: a three class pair residue-discrimination study
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
30. Casagrande A, Lain O, Policriti A, Testolin R
LadderFinder: a tool for allelic ladders
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
31. Castrignanò T, D'Antonio M, D'Onorio De Meo P, Sanna N, Rizzi R, Mignone F, Bonizzoni P, Pesole G
HPC for Aspic: a distributed web resource for alternative splicing prediction and transcript isoform characterization
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
32. Catalano D, Grillo G, Perrone G, Stea G, Susca A, Mulè G, Licciulli F
AFLP Manager: a database to manage and analyze AFLP finger-print profiles
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
33. Caterino M, Orrù S, Aspesi A, Armiraglio M, Loreni F, Santoro C, Dianzani I, Ruoppolo M
Analysis of Rps19 protein and Rps19 missense mutant proteins interactome
Meeting: BITS 2007 - Year: 2007
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Topic: Biomedical informatics
34. Ceccarelli M, Maratea A
An Alternative Splicing Predictor in C.Elegans Based on Time Series Analysis
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
35. Cereda M, Sironi M, Comi GP, Pozzoli U
Integrating current knowledge to predict mutations effect on splicing.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
36. Chiusano ML, D'Agostino N, Traini A, Licciardello C, Raimondo E, Aversano M, Frusciante L
An integrated computational workbench for structural and functional analysis in the solanaceae genomics network
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
37. Ciolfi A, Sassi M, Sessa G, Salvucci S, Uva P, Becker J, Morelli G, Ruberti I
A global expression analysis of the shade avoidance response in Arabidopsis thaliana
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
38. Coppe A, Basso D, Ferrari F, Danieli GA, Bicciato S, Bortoluzzi S
REEF and LAP: a computational framework for the identification of chromosomal regions associated to functional features enrichment and differential expression.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
39. Corà D, Di Cunto F, Caselle M, Provero P
Identification of candidate regulatory sequences in mammalian 3'-UTR regions by statistical analysis of oligonucleotide distributions
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
40. Costantini S, Colonna G, Facchiano AM
How could the protein-protein complexes be modelled?
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
41. Costantini S, Facchiano AM, Colonna G
Globularity criteria to evaluate the structural quality of modeled proteins
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
42. Cozzuto L, Petrillo M, Silvestro G, Di Nocera PP, Paolella G
Evaluation of the potential for secondary structure formation in repeated bacterial sequences: identification of 58 families sharing common motifs.
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
43. Crispi S, Di Gestore F, Paola F, Ursini MV, Menegozzo M
Gene expression analysis of mesothelioma samples
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
44. Cubellis MV, Andreotti G, Degryse B, Motta A, Blasi F, Fernandez-Recio J
Protein docking by a combined approach
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
45. Cuccato G, Marucci L, Siciliano V, Di Bernardo D
Synthetic 'switches': a new way to tackle complex diseases and biotechnological innovation
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
46. D'Acierno A, Facchiano AM, Mazzeo MF, Siciliano RA
SpectraWEB: A WEB Application for Storing and Retrieving Bacterial MALDI-TOF-MS Spectra
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
47. D'Agostino N, Chiusano ML
Characterizing the tomato transcriptome
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
48. D'Elia D
News from EMBnet
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
49. D'Elia D, Germinario L, Grillo G
Analysis of UTRs from nuclear-encoded mitochondrial mRNA in Metazoa reveals new insights about molecular mechanisms controlling mitochondrial biogenesis
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
50. D'Ursi P, Chiappori F, Salvi E, Merelli I, Rovida E, Milanesi L
Grid docking simulations for comparative ligand binding of neuraminidase structures
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
51. Dalla E, Braidotti M, Buttol A, Zantoni M, Montanari A, Schneider C
Temporal Analysis of Nucleotide Sequence Annotation
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
52. De Simone V, Aiese Cigliano R, Parlati A, Costa A, Romano M, Martinelli R, Grillo S
Short sequence motifs enriched in 5 upstream and UTR regions of A.thaliana genes homologous to potato hyper- or hypo-expressed mrnas upon hydric stress
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
53. De Simone V, Donnarumma I, Gambardella L, Romano M, Pauciullo P, Gentile M, Martinelli R, Rubba P
Short sequence motifs enriched in 5 upstream and UTR regions of human genes hyper- or hypo-expressed upon statin treatment in familial combined hyperlipidemia patients
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
54. Del Fabbro C, Cattonaro F, Policriti A, Morgante M
Automatic identification of Transposable Elements
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
55. Della Gatta G, Bansal M, Ambesi-Impiombato A, Missero C, Di Bernardo D
Integrated experimental and systems biology approach to the identification of transcriptional regulatory network of p63 transcription factor
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
56. Demichelis F, Greulich H, Macoska JA, Beroukhim R, Sellers WR, Garraway L, Rubin MA
SNP Panel Identification Assay (SPIA): a genetic-based assay for the identification of cell lines
Meeting: BITS 2007 - Year: 2007
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Topic: Large scale analysis of experimental data
57. Di Camillo B, Toffolo G, Cobelli C
A transcription network simulator
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
58. Di Camillo B, Toffolo G, Cobelli C
Bayesian inference of transcriptional networks from gene temporal expression patterns
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
59. Dutta A, Blanzieri E
Inferring causal relationships between dynamic genomic phase clusters
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
60. Eberini I, Emerson A, Gambari R, Rossi E, Giuliani S, Piccagli L
Molecular Dynamics Simulation of the NF-kB Transcription Factor
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
61. Falciano F, Zangrando A, Bicciato S, Tagliafico E, Ferrari F
Gene marker identification for prognostic prediction of Acute Mieloid Leukemia (AML) from gene expression data.
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
62. Ferraro E, Peluso D, Via A, Ausiello G, Helmer-Citterich M
SH3-Hunter: discovery of SH3 domain interaction sites in proteins.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
63. Ferro A, Forte S, Giugno R, Laganà A, Pulvirenti A, Barbagallo D, Di Pietro C, Majorana A, Purrello M, Ragusa M, Bonci D, De Maria R, Pagliuca A
Prediction of human targets for viral encoded microRNAs by thermodynamics and empirical constraints
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
64. Folgieri R, Bertoni A, Valentini G
An experimental comparison of Random Subspace and Random Projection Ensembles of Support Vector Machines for the classification of gene expression data.
Meeting: BITS 2007 - Year: 2007
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Topic: Large scale analysis of experimental data
65. Folgieri R, Rezzi S, Masoum S, Malabat C, Jalali-heravi M, Rutledge DN, Axelson DE, Heberger K, Mariani C, Reniero F, Guillou C
Application of Multivariate Analysis, Support Vector Machines and Artificial Neural Network to the Processing of Nuclear Magnetic Resonance data of olive oil and fish oil samples for classification of geographic origin and discrimination between wild and farm fish.
Meeting: BITS 2007 - Year: 2007
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Topic: Large scale analysis of experimental data
66. Fu L-M, Isella C, Corà D, Caselle M, Medico E
Use of an innovative clustering algorithm to summarize the outcome of genome-wide motif searches
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
67. Fumagalli M, Pozzoli U, Comi GP, Sironi M
Human/chimpanzee trans-specific SNPs: searching for balancing selection
Meeting: BITS 2007 - Year: 2007
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Topic: Molecular evolution and biodiversity
68. Furlanello C, Jurman G, Riccadonna S, Barla A, Paoli S, Merler S
Biomarker stability of multiresolution proteomic profiling
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
69. Gennarino V, Avellino R, Maselli V, Roma G, Peluso I, Stupka E, Banfi S
Ultra Conserved Elements: twofold functions ?
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
70. Gini G, Folgheraiter M, Caccia C, Salvati P, Dondio G, Forlani R
A GMDH type net for the early screening of candidate drugs: the case of alpha-aminoamides
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
71. Giuliani S, Rossi S, D'Ascia S, Rossi E, Emerson A, Fiameni G, Tagliavini L, Frangiamone G, Volinia S
Microarray data infrastructure using Gebbalab based on Alfresco technology
Meeting: BITS 2007 - Year: 2007
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Topic: Biomedical informatics
72. Grober Olì MV, Mutarelli M, Cicatiello L, Ravo M, Vigilante A, Facchiano AM, Weisz A
Comparative whole-genome microarray analysis of two estrogen-responsive breast cancer cell lines
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
73. Guarracino MR, Feminiano D, Del Vecchio Blanco F, Cuciniello S
Incremental classification models and characterization for gene expression data analysis
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
74. Iorio F, Di Bernardo D
A fuzzy cluster analysis model for mining the cMap dataset to investigate common drug modes of action
Meeting: BITS 2007 - Year: 2007
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Topic: Large scale analysis of experimental data
75. Kremer A, Gonzalez Couto E, Gotta S, Heitz F, Magnoni L, Matteoni S, Raggiaschi R, Terstappen GC
Huntington's Disease: From Experimental Results to Interaction Networks, Patho-Pathway Construction and Disease Hypothesis
Meeting: BITS 2007 - Year: 2007
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Topic: Biomedical informatics
76. Lauria M, Di Bernardo D
A computationally efficient method for gene network identification
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
77. Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
78. Licciulli F, Grillo G, Turi A, Delle Foglie G, Catalano D
CROSSMiner: a deductive system to discover biological relations
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
79. Loguercio S
Critical points in a pathogen bacterial network and their implication for drug discovery.
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
80. Manavski S, Mariano A, Valle G
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
81. Marabotti A, Facchiano AM
Critical Assessment of Side Chain Prediction (CASCP): an in-house evaluation on single-point mutants of lysozyme.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
82. Marangoni R, Barison V, Cossi M, Gottardi R, Raiteri R
Protein imaging via AFM: a feasibility study.
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
83. Maratea A, Ceccarelli M, Baldi P
An Approach to Multifactorial Microarray Data Analysis
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
84. Marcatili P, Tramontano A
MoVIN server: Motif Validation of Interaction Networks
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
85. Marsico A, Sapra KT, Labudde D, Schroeder M
A computational analysis of Bacteriorhodopsin and four mutants reveals local conformational changes correlating to changing probabilities in unfolding pathways
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
86. Martignetti L, Caselle M, Jacq B, Herrmann C
DrosOCB: a high resolution map of conserved non coding sequences in Drosophila
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
87. Maselli V, Di Bernardo D, Banfi S
A preliminary study on distribution and conservation of MicroRNAs
Meeting: BITS 2007 - Year: 2007
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Topic: Molecular evolution and biodiversity
88. Masseroli M, Ceresa M
Gene expression annotations and functional statistical analysis of human gene lists
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
89. Mazzara S, Pattini L, Vicquery F, Bellone M, Alessio M, Cerutti S
Overall quantitative pattern extraction analysis of two-dimensional electrophoresis images from prostatic cancer mouse model
Meeting: BITS 2007 - Year: 2007
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Topic: Large scale analysis of experimental data
90. Menozzi G, Sironi M, Pozzoli U
Conserved elements shape both size and base composition of noncoding regions in Drosophila
Meeting: BITS 2007 - Year: 2007
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Topic: Molecular evolution and biodiversity
91. Merlino A, Sica F, Mazzarella L
Comparative structural analysis of active site clefts in pancreatic-like ribonucleases
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
92. Milani G, Larizza C, Buetti I, Nuzzo A, Sala C, Toniolo D, Bellazzi R
Automatic pedigree reconstruction for genetic studies in isolated populations
Meeting: BITS 2007 - Year: 2007
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Topic: Biomedical informatics
93. Mirisola V, Larghero P, Blengio F, Romeo F, Pfeffer U
Pharmacogenomics of Weak Drug Effects
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
94. Molineris I, Sales G, Peyron C, Di Cunto F, Bianchi F, Caselle M
Prediction of new genes and transcriptome survey through an 'ab-initio'
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
95. Mosca E, Alfieri R, Merelli I, Milanesi L
Development of a systems biology infrastructure for mathematical modelling and parameter estimation
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
96. Mucherino A, Di Serafino D, D'Apuzzo M, Costantini S, Facchiano AM, Colonna G
A geometrical model for generating mainly-alpha protein conformations
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
97. Muller H, Mancuso FM, Cittaro D, Finocchiaro G
Identification of cancer signaling pathways from published gene expession signatures using PubLiME
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
98. Muselli M, Ruffino F
Asymmetric Support Vector Machines for gene selection
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
99. Mutarelli M, Cicatiello L, Ravo M, Ferraro L, Facchiano AM, Weisz A
Evaluation of a novel microarray-based assay for gene expression profiling on formalin-fixed, paraffin embedded (FFPE) tissue samples
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
100. Mutarelli M, Cicatiello L, Ravo M, Grober Olì MV, Facchiano AM, Angelini C, Weisz A
Time-course whole-genome microarray analysis of estrogen effects on hormone-responsive breast cancer cells
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
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