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Name

Somatic Mutation data set (Rel. 14)

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Status The current release has 26597 entries and was indexed 17-Feb-2016.
Description

This is the Somatic Mutations data set of the IARC TP53 Mutation Database (Rel. 14)

WWW http://www-p53.iarc.fr/index.html
Contact
International Agency for Research on Cancer (IARC) TP53 database,
IARC,
150 Cours Albert Thomas,,
69372 Lyon CEDEX 08, France.

Phone: +33 (0)4 72 73 84 85
Fax : +33 (0)4 72 73 85 75

Data-fields in SRS
Field Name
Short Name
Type
No. of Keys
No. of Entry References
Indexing Date
Status
Mutation ID within this db mid id 26597 26597 17-Feb-2016 ok
Unique gene variation id, linked to the Gene Variations dataset gev index 4235 26597 17-Feb-2016 ok
Bibliographic reference ID within this db rei index 2179 26597 17-Feb-2016 ok
Patient ID within this db ind index 23866 26597 17-Feb-2016 ok
Sample ID within this db sai index 24190 26597 17-Feb-2016 ok
Exon which contains the mutation exo index 10 25873 17-Feb-2016 ok
Intron which contains the mutation itr index 10 699 17-Feb-2016 ok
Codon where the mutation is located cno num 369 26597 17-Feb-2016 ok
Genomic nucleotide position of mutation nug num 1108 26597 17-Feb-2016 ok
Occurance of mutation in a CpG site cpg index 2 26597 17-Feb-2016 ok
Occurance of mutation in a Splice site sps index 6 26597 17-Feb-2016 ok
Type/nature of mutation typ index 13 26597 17-Feb-2016 ok
Description and relevant information of mutation des index 328 26597 17-Feb-2016 ok
HGVS coded mutation (coding sequence as reference) cde index 4214 26597 17-Feb-2016 ok
Substitution rates in p53 coding sequence mrt real 24 22391 17-Feb-2016 ok
Base sequence of Wild Type codon wtc index 66 26597 17-Feb-2016 ok
Base sequence of Mutant codon muc index 127 26597 17-Feb-2016 ok
Wild Type Aminoacids wta index 23 26597 17-Feb-2016 ok
Mutated Aminoacids mua index 73 26597 17-Feb-2016 ok
Mutation description at the protein level pde index 1730 26597 17-Feb-2016 ok
Aminoacid substitution rates art real 46 22627 17-Feb-2016 ok
Effect of the mutation before the encoding eff index 9 26597 17-Feb-2016 ok
Possible stop codon in case of frameshift mutation pus num 79 26597 17-Feb-2016 ok
Arbitrary name of analyzed sample san index 23935 26601 17-Feb-2016 ok
Nature of the mutated sample sas index 13 26597 17-Feb-2016 ok
Origin of the tumor sample tuo index 19 26597 17-Feb-2016 ok
Site of the tumor defined by organ top index 74 26597 17-Feb-2016 ok
Abbreviated topography sht index 74 26597 17-Feb-2016 ok
Structural motif smo index 11 26597 17-Feb-2016 ok
ICD-O code for topography toc index 74 26597 17-Feb-2016 ok
Precise identification of anatomic site, organ or tissue sto index 192 26597 17-Feb-2016 ok
Morphology and/or histologic type of tumor mor index 323 26597 17-Feb-2016 ok
ICD-O or SNOMED code for morphology moc index 323 26597 17-Feb-2016 ok
Grade of tumor, as given in the cited publication gra index 42 7157 17-Feb-2016 ok
Tumor stage, as given in the cited publication sta index 118 6494 17-Feb-2016 ok
Tumor, Node and Metastasis status (TNM) tnm index 184 4051 17-Feb-2016 ok
P53 immunostaining ihc index 4 26597 17-Feb-2016 ok
Additional info add index 532 10160 17-Feb-2016 ok
Sex of the patient sex index 3 15520 17-Feb-2016 ok
Age of the patient age num 96 10942 17-Feb-2016 ok
Ethnicity of the patient eth index 17 2247 17-Feb-2016 ok
Patient population group pop index 21 26597 17-Feb-2016 ok
Country in which the patient was living cnt index 69 26597 17-Feb-2016 ok
City or region within the country of the patient geo index 216 9374 17-Feb-2016 ok
Presence of a polymorphism in TP53 gene tpo index 13 2209 17-Feb-2016 ok
Presence of a germline mutation in TP53 glm index 31 26597 17-Feb-2016 ok
Presence/absence of cancers in the patient family fah index 52 471 17-Feb-2016 ok
Smoking status of the patient tob index 16 26597 17-Feb-2016 ok
Drinking status of the patient alc index 7 26597 17-Feb-2016 ok
Risk factors to which the patient has been exposed exp index 39 26597 17-Feb-2016 ok
Pathogen detected in the patient ina index 34 26597 17-Feb-2016 ok
PubMed reference number pen index 2140 26150 17-Feb-2016 ok
AllText all group 0 0   not indexed
Loaders
XML_Mutation
TP53_Mutation_View_Class
TP53_Sample_View_Class
TP53_Patient_View_Class
Mutation
Mutation_type
Topography
Links
From Databank
Entries Linked
To Databank
Entries Linked
Links Total
Indexing Date
TP53_SOMATIC 26597 TP53_SOMATIC_REF 2179 26597 17-Feb-2016
TP53_SOMATIC 26206 TP53_MUTATIONS 3950 26206 17-Feb-2016
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
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