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Name

TP53 Status In Human Cell-lines data set (Rel. 15)

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Status The current release has 2384 entries and was indexed 17-Feb-2016.
Description

This is the TP53 Status in human cell-lines data set of the IARC TP53 Mutation Database (Rel. 15)

WWW http://www-p53.iarc.fr/index.html
Contact
International Agency for Research on Cancer (IARC) TP53 database,
IARC,
150 Cours Albert Thomas,,
69372 Lyon CEDEX 08, France.

Phone: +33 (0)4 72 73 84 85
Fax : +33 (0)4 72 73 85 75

Data-fields in SRS
Field Name
Short Name
Type
No. of Keys
No. of Entry References
Indexing Date
Status
Unique Table ID uti id 2384 2384 17-Feb-2016 ok
Unique ID for the Cell Line Status data set uni num 2263 2384 17-Feb-2016 ok
Cell_line_name cln index 2126 2392 17-Feb-2016 ok
ATCC_ID atc index 404 504 17-Feb-2016 ok
Cosmic_ID csm index 796 918 17-Feb-2016 ok
Short_topo sht index 53 2384 17-Feb-2016 ok
Morphology mor index 142 2384 17-Feb-2016 ok
Origin of the tumor sample tuo index 18 2384 17-Feb-2016 ok
Any additional information add index 150 474 17-Feb-2016 ok
Sex of the patient sex index 3 1277 17-Feb-2016 ok
Age at cancer diagnosis of the patient from whom the cell-line has been isolated aod num 90 1050 17-Feb-2016 ok
Country in which the patient was living cnt index 25 2384 17-Feb-2016 ok
Patient population group pop index 12 2384 17-Feb-2016 ok
Presence of a germline mutation in TP53 glm index 4 2384 17-Feb-2016 ok
Pathogen detected in the patient ina index 15 2384 17-Feb-2016 ok
Smoking status of the patient tob index 5 2384 17-Feb-2016 ok
Drinking status of the patient alc index 5 2384 17-Feb-2016 ok
Risk factors to which the patient has been exposed exp index 8 2384 17-Feb-2016 ok
Loss of heterozygocity at p53 locus tpl index 4 2384 17-Feb-2016 ok
TP53_status tps index 3 2384 17-Feb-2016 ok
KRAS_status kst index 20 2384 17-Feb-2016 ok
Other_mutations otm index 36 2513 17-Feb-2016 ok
P53 immunostaining ihc index 4 2384 17-Feb-2016 ok
Gene variations ID, as linked to the gene variation data set gev index 647 1672 17-Feb-2016 ok
Exon exo index 10 1587 17-Feb-2016 ok
Intron itr index 9 64 17-Feb-2016 ok
Nucleotide nug num 427 1672 17-Feb-2016 ok
Codon_number cno num 251 1672 17-Feb-2016 ok
Description des index 89 1672 17-Feb-2016 ok
HGVS coded mutation (coding sequence as reference) cde index 646 1672 17-Feb-2016 ok
Base sequence of Wild Type codon wtc index 62 1672 17-Feb-2016 ok
Mutant_codon muc index 73 1672 17-Feb-2016 ok
Wild Type Aminoacids wta index 22 1672 17-Feb-2016 ok
Mutant_AA mua index 22 1672 17-Feb-2016 ok
Mutation description at the protein level pde index 404 1672 17-Feb-2016 ok
SIFT_class ist index 3 1672 17-Feb-2016 ok
AGVGD_class ast index 4 1672 17-Feb-2016 ok
Structure_function_class sst index 3 1672 17-Feb-2016 ok
Transactivation_class tst index 5 1672 17-Feb-2016 ok
WAF1 transcriptional activity as % of WT activity waf real 214 1197 17-Feb-2016 ok
MDM2 transcriptional activity as % of WT activity mdm real 201 1197 17-Feb-2016 ok
BAX transcriptional activity as % of WT activity bax real 204 1197 17-Feb-2016 ok
AIP1 transcriptional activity as % of WT activity aip real 196 1197 17-Feb-2016 ok
h1433s transcriptional activity as % of WT activity h14 real 184 1197 17-Feb-2016 ok
GADD45 transcriptional activity as % of WT activity gad real 203 1197 17-Feb-2016 ok
NOXA transcriptional activity as % of WT activity nox real 209 1197 17-Feb-2016 ok
P53R2 transcriptional activity as % of WT activity p5r real 235 1197 17-Feb-2016 ok
Somatic_ref_id sri index 353 2384 17-Feb-2016 ok
Journal jou index 136 6218 17-Feb-2016 ok
Year yea num 24 2384 17-Feb-2016 ok
Volume vol index 137 2377 17-Feb-2016 ok
Start_page str index 321 2383 17-Feb-2016 ok
PubMed_entry pen index 347 2375 17-Feb-2016 ok
Type of material used to screen the mutation stm index 2 2444 17-Feb-2016 ok
Prescreening method used to detect the mutations pre index 13 2402 17-Feb-2016 ok
DNA or RNA cloned before sequenced maq index 3 2349 17-Feb-2016 ok
Screening on exon number 2 ex2 index 2 2384 17-Feb-2016 ok
Screening on exon number 3 ex3 index 2 2384 17-Feb-2016 ok
Screening on exon number 4 ex4 index 2 2384 17-Feb-2016 ok
Screening on exon number 5 ex5 index 2 2384 17-Feb-2016 ok
Screening on exon number 6 ex6 index 2 2384 17-Feb-2016 ok
Screening on exon number 7 ex7 index 2 2384 17-Feb-2016 ok
Screening on exon number 8 ex8 index 2 2384 17-Feb-2016 ok
Screening on exon number 9 ex9 index 2 2384 17-Feb-2016 ok
Screening on exon number 10 ex10 index 2 2384 17-Feb-2016 ok
Screening on exon number 11 ex11 index 2 2384 17-Feb-2016 ok
AllText all group 0 0   not indexed
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