Geena 2
Build March 10, 2015.
This system is under active development,
please forgive us for possible errors and
send us your comments, criticisms and congratulations,
if any.

Welcome to Geena 2, a tool for MS spectra filtering, averaging and aligning.

(Bright Search Interface)

 Job information
 
Job name:
 
Data file:
(see information on data file format and an example file)
 
Analysis range: From m/z to m/z
Normalization peak: No    Yes, at m/z
 
Minimum number of signals in average spectra:
Specify:
Minimum number of signals in aligned spectrum:
Specify:
 
Your email:
Country:
 

This is the Bright Search Interface (QSI) that allows to use Geena 2 with some flexibility.

You may be interested in using the Quick Search Interface (QSI), which adopts default values for the majorityy of parameters, or the Standard Search Interface (SSI), by which you are able to tune all available parameters to your needs.

Using Geena 2 should be straightforward. Input and output data use a simple format. Nevertheless, should you have any problem, see the help or the information on data formats pages.

NB! This version includes a new feature. When a normalization peak is provided, it is used to calibrate m/z values.
In practice, for each spectrum all m/z values are recomputed by taking into account the difference between the teorethical and the actual m/z values of the normalization peak.

NB! Move your mouse over the icon for a contextual help.


For information, get in touch with:
Paolo Romano,
IRCCS Ospedale Policlinico San Martino,
Genoa, Italy
Click here to see my email address

If you use Geena, please cite the following paper:
Romano P et al.
Geena 2, improved automated analysis of MALDI/TOF mass spectra.
BMC Bioinformatics 2016, 17(Suppl 4):61
PMID: 26961516; DOI: 10.1186/s12859-016-0911-2